Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq29 219 6e-52 seq5 196 6e-45 seq15 140 4e-28 seq11 123 3e-23 seq14 102 1e-16 >seq29 Length=49578892 Score = 219 bits (242), Expect = 6e-52 Identities = 238/316 (75%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 9392 AGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAA 9451 || || || |||||||| ||| ||||||| | ||| ||| |||| | ||||||||| Sbjct 19261218 AGAAGCCACGACCAGCTGCACAGTTTCACCATAACAAAACATCTTCAAGATTCCTGACAA 19261277 Query 9452 AATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGA 9511 | |||||||||||| | ||| | |||||||||| ||| | | |||||||||| || Sbjct 19261278 GAACAAAATCCACAAACCAGAAAATAGGCCTGCTCCAAATTTGCCGCAATCTCTCTTAGA 19261337 Query 9512 TTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCAT 9571 ||| |||||||| |||| | || |||| |||||| ||||| || ||| |||||| Sbjct 19261338 TTGCAGAGTATACACAGTTGAATCAGGAAATACTGCATGGGTCAGTATAAAATCTTGCAG 19261397 Query 9572 AACGACATGCACATCATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGT 9631 || | || |||||| |||||||||||| |||||| || || | |||| ||||| | Sbjct 19261398 GACAATATCTACATCACAGAAAGTAACAATGAAGGCCACAGTCAGCGCTTCCAACAGTAT 19261457 Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 |||| || ||||||||||| || |||||||| |||||||||| |||||||| | || Sbjct 19261458 AAATACAAAAAGCAGGTATGGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCATGTCTAA 19261517 Query 9692 AATCAAGCCTATAGAT 9707 ||||| || | |||| Sbjct 19261518 AATCAGACCAAAAGAT 19261533 Score = 116 bits (128), Expect = 5e-21 Identities = 130/170 (76%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 9230 TTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAA 9289 ||||| |||| | ||| ||||| || || || || || || || |||| ||||||||| Sbjct 19260826 TTTCT-ATTAATTGCTTGCAAAATTTGCAA-AGGTGTAA-AAGAGGTTGAGGATATCCAA 19260882 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||| | |||||| ||||| ||||| || ||||| || ||| ||| || ||||||| Sbjct 19260883 GTAAAGGCTGATAGCAGCTAATACATATTCCTCAGGTGACAGCCTATACATCAGTGAGTA 19260942 Query 9350 CGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACA 9399 ||||||||||| ||||||| |||||| | |||||| || | ||||| || Sbjct 19260943 TGTGTCATAGATGATGAATCTGCAGAAAAGAAGGGCTCCTAGAGCAGCCA 19260992 >seq5 Length=114008975 Score = 196 bits (216), Expect = 6e-45 Identities = 158/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | ||||||| |||||||| |||||||||||||||||| Sbjct 47924654 TTTTTATTAACTGCTTCCAAAACCCGTAACAGGTGCAAGAAGAGATTGATGATATCCAAG 47924595 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| | || || |||||||| Sbjct 47924594 TAGAGGTTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTGTGCATCAGTGAGTGT 47924535 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || ||||| || ||||| |||| Sbjct 47924534 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCCCCAGCAGCCAAGACCAACTCC 47924475 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 47924474 ACTGTCTCACT 47924464 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||| ||||||| |||||| | ||||| Sbjct 47921644 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAAAGTATATACAGTCAAACCAAGA 47921585 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||| ||||| Sbjct 47921584 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAGGTAAC 47921526 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| || ||||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 47909194 CCATTCGGATATGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 47909135 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||||||||| | |||| || Sbjct 47909134 TGGAGGAGCAGGGGTAGCGG 47909115 >seq15 Length=79227551 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 47744670 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 47744729 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 47744730 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 47744789 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 47744790 CTGTTTCTTATACCATA 47744806 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || || || || || || || | | Sbjct 47769329 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACTGCAATCCTTGCTGCCAGGA 47769388 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 47769389 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 47769448 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 47769449 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 47769494 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 47750120 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 47750179 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 47750180 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 47750239 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 47750240 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 47750299 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 47750300 GTTTATTCGA 47750309 >seq11 Length=102031526 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 79381645 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 79381704 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 79381705 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 79381764 Query 36300 C 36300 | Sbjct 79381765 C 79381765 Score = 114 bits (126), Expect = 2e-20 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 79383335 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 79383394 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | ||||||||||||||| |||||| Sbjct 79383395 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 79383440 >seq14 Length=93702490 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 71995164 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 71995105 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 71995104 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 71995046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657436485634320