Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 3e-14 seq3 93.3 3e-14 seq26 84.2 2e-11 >seq18 Length=67558079 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 35524283 GCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 35524342 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | ||||| | ||| |||||||| | |||| | ||| ||||| || Sbjct 35524343 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 35524402 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| ||||||| ||||||| ||||| || || Sbjct 35524403 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 35524462 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || | || || || || ||||| ||||| || Sbjct 35524463 CTCAAGAGTGATGGTCTTCCCCCTTAGGGTCTTCACGAAAATCTGCATCTT 35524513 >seq3 Length=114358107 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC--G 15193 |||||| | | ||| || ||||||||||| ||||| || ||||| |||||||| || Sbjct 18939007 GCCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 18938948 Query 15194 CTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTT 15253 | || | | || | ||||| | ||| |||||| | | |||| | ||| ||||| Sbjct 18938947 CAAAGCA-TGTC-CATCTTCCACTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA 18938890 Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 ||||||||||| || || || ||| | ||||| |||||| ||||| || Sbjct 18938889 GGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCG 18938830 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCA-GAGTTTTTACAAAAATTTGCATATT 15366 || | | || ||||| || ||||||| |||| || |||||||| ||||| || Sbjct 18938829 ACCTTGAGAGTGATGGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCATCTT 18938776 >seq26 Length=53792517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 43958347 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 43958288 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||| | | |||| | ||| ||||| ||| Sbjct 43958287 AAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGA 43958228 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||| | ||||| || || Sbjct 43958227 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACC 43958168 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA 15362 || | || |||| || |||||||| || || | ||||| |||| Sbjct 43958167 TCAAGAGTGGTGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCA 43958122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361784150547618