Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq18 154 3e-32 seq26 138 3e-27 seq2 113 1e-19 seq14 111 4e-19 seq7683 104 5e-17 seq11 104 5e-17 seq9 95.1 3e-14 >seq18 Length=67558079 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 35524302 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 35524361 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 35524362 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 35524421 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 35524422 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 35524481 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 35524482 CCCCTTAGGGTCTTCACGAAAATCTGCATCTTG 35524514 >seq26 Length=53792517 Score = 138 bits (152), Expect = 3e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| || |||| || | || || | |||||||| | || || || || ||||| || Sbjct 43958357 TTTCTTAGTTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTT 43958298 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||||| | ||| | || ||||| ||||| || ||| |||| || || || || || Sbjct 43958297 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 43958238 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 |||||||| |||||||| |||||||| ||||| || |||||||||||| ||||| Sbjct 43958237 GTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGA 43958178 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 || || ||||| || || | ||||| || || || || || | || ||||||| Sbjct 43958177 GGGCTCGACCTCAAGAGTGGTGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCA 43958122 >seq2 Length=128023632 Score = 113 bits (124), Expect = 1e-19 Identities = 243/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 65635 TTACT-CCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACA 65693 ||||| ||||| |||||||| || | ||| || ||||| || ||||| | || | Sbjct 111181804 TTACTTCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAA--ATTT--- 111181858 Query 65694 GAAAGAGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTA 65753 || | ||| | ||||||| | ||| |||| | |||| || || | | | Sbjct 111181859 ----GAACTTCCTCTGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTTGA 111181914 Query 65754 TCGCCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTA 65813 || || || | | ||||| ||| || || |||||||| | | | |||||||| Sbjct 111181915 TCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACCAACATTT 111181974 Query 65814 CCTCTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAAT 65873 |||||||| ||| |||||| |||||||| ||||||||||| |||| || || || Sbjct 111181975 CCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAG 111182034 Query 65874 CCAGATCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTA 65933 ||||| || ||||| | ||| ||||| | || ||||| | ||| | ||||| Sbjct 111182035 CCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTT 111182094 Query 65934 AATACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATAT 65993 || | |||| ||||| ||| |||| || ||||| || || || || || ||||| Sbjct 111182095 TTCACAAGCACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAG 111182154 Query 65994 CC 65995 || Sbjct 111182155 CC 111182156 >seq14 Length=93702490 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 71995031 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCT 71995090 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 71995091 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 71995150 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 71995151 ATCAGCAGAGATGAAG 71995166 >seq7683 Length=5699132 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || |||||||| | ||| | |||| ||| Sbjct 368172 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA----TCTTTCAGT 368117 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || || || || || |||||||| |||||| ||| |||| | | Sbjct 368116 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACC 368057 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || | ||||||||||||| || ||| || | ||||| | || || ||||| || Sbjct 368056 TTGACCTTTACATTTTCTATGGGATCTGAGGGCTTGACCTCAGGAGTGATGGTCTTCCCC 367997 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || |||||||| ||| Sbjct 367996 ATCAGGGTCTTCACGAAAATCTGCATCTTG 367967 >seq11 Length=102031526 Score = 104 bits (114), Expect = 5e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | || || || || ||||| || |||| | | || | || Sbjct 42483380 CTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAGACAT-CCA 42483438 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| |||||||| ||||||| || || || || || |||||||| | ||||| ||| Sbjct 42483439 TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCTTA 42483498 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| ||||| || ||||||||||||| ||||| || | |||| || | || Sbjct 42483499 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGATG 42483558 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| || || | || || || || ||||||||| || Sbjct 42483559 CTCTTCCCTGTCAAGGTCTTCACGAAAATCTGCATTATG 42483597 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || |||||||| || || || || ||||| ||||| ||||||| | Sbjct 16973572 CCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 16973513 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || ||||||||||||| | ||| |||| || || | || Sbjct 16973512 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 16973453 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | ||| | || || || || | || |||||||| ||| Sbjct 16973452 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTTG 16973411 >seq9 Length=91317560 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 7013692 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 7013633 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || || |||||||| | ||| ||||| || ||| Sbjct 7013632 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 7013573 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 7013572 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 7013538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150078099370584