Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 5e-12 >seq17 Length=72096382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| |||| || ||| | ||||||||||| Sbjct 46150763 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGT 46150704 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || | |||||| || || | | ||| || || || ||| Sbjct 46150703 TTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTC 46150644 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| || | | |||| ||| | || ||||||||||| ||| Sbjct 46150643 ACCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTG 46150584 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTCTTG 48735 || || || ||||| |||||||| || | ||| Sbjct 46150583 AGGGTCTTTACAAAGATCTGCATTGTCTGTTG 46150552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420791717357498