Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16 165 1e-35 seq11 105 9e-18 >seq16 Length=80959047 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 68835627 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 68835686 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 68835687 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 68835746 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | ||| || | | || || |||||||| | Sbjct 68835747 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGTGGGTAGATCATTTCA 68835806 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 68835807 ACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCATTAATCATCT 68835855 Score = 161 bits (178), Expect = 1e-34 Identities = 218/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || | Sbjct 68833950 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 68834009 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 68834010 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 68834069 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | || || || || || |||| || ||||| ||||| || || || || || | Sbjct 68834070 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCGGCTTCTA 68834129 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| |||| || |||||||||| |||||||||||| || |||| | ||| |||| Sbjct 68834130 CCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAGAAGGGCGGGATACA 68834189 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||| || || ||||||||||| || || | || ||||| |||||||| |||| Sbjct 68834190 GCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 68834249 Query 8973 CTGT 8976 |||| Sbjct 68834250 CTGT 68834253 Score = 105 bits (116), Expect = 9e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | | ||| ||| | || Sbjct 68836633 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAATATCTGTCTTGAA 68836692 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 68836693 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 68836752 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGATT 10207 ||| |||| | || | ||||| ||||| |||||| | | || ||| || || | Sbjct 68836753 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCTC 68836812 Query 10208 TTT 10210 ||| Sbjct 68836813 TTT 68836815 >seq11 Length=102031526 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || ||||| | |||||||| | || || |||||| ||| Sbjct 85463735 AAGCCCACCTCACCACCAAATGTGCTCGCCTTCCAGTACTCTGGAGAACAGATGGGGTTT 85463676 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || ||||| || |||||||||| || | || ||||| || |||||| Sbjct 85463675 CCTAAGAGGCCCTTAAGGGAGAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 85463616 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| || |||| ||| ||||||||| Sbjct 85463615 GAGTTAGGATGGCACTTCTCAAGAAGTAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 85463556 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || ||||| || |||| Sbjct 85463555 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCACCTG 85463513 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || ||||| || ||||| | || |||||| | || || || ||| | ||| Sbjct 85450662 GTACTCACCCCGTGGCCCAGCGCCTTGGTGAAGCCAGGACCCATCTTGCCGGA--AGTTT 85450605 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 |||| ||||| || ||||| |||||| |||| ||||||||||| | ||||||||| || | Sbjct 85450604 TAAAGAACTGATGGGTGAAGTGTTGGGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGAG 85450545 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | ||||| |||| |||||| Sbjct 85450544 GGTCGGGGATGAACTTCCTCC 85450524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707732155593120