Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18 87.8 1e-12 seq3 84.2 2e-11 >seq18 Length=67558079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| || |||| |||||| || || || ||||| |||||||| || Sbjct 35524283 GCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 35524342 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | | ||||| | ||| |||||||| | |||| | || ||||| || Sbjct 35524343 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 35524402 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| ||||||| ||||| || || Sbjct 35524403 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 35524462 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || | || || || || ||||| ||||| || Sbjct 35524463 CTCAAGAGTGATGGTCTTCCCCCTTAGGGTCTTCACGAAAATCTGCATCTT 35524513 >seq3 Length=114358107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC--G 15006 |||||| | | ||| || ||||||||||| || || || ||||| |||||||| || Sbjct 18939007 GCCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 18938948 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | || | | || | ||||| | ||| |||||| | | |||| | || ||||| Sbjct 18938947 CAAAGCA-TGTC-CATCTTCCACTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA 18938890 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||||||||||||| || || ||| ||||| |||||| ||||| || Sbjct 18938889 GGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCG 18938830 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCA-GAGTTTTTACAAAAATTTGCATATT 15179 || | | || ||||| || ||||||| |||| || |||||||| ||||| || Sbjct 18938829 ACCTTGAGAGTGATGGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCATCTT 18938776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357002172218930