Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16 149 9e-31 seq11 116 5e-21 >seq16 Length=80959047 Score = 149 bits (164), Expect = 9e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 68835614 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 68835673 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | |||||| |||||||| |||||||| | ||| || Sbjct 68835674 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGG 68835733 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| || || | ||||| ||||| || | || || | | || | Sbjct 68835734 CACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGTGG 68835793 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 68835794 GTAGATCATTTCAACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCATTAAT 68835850 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | ||||| ||| | || Sbjct 68836633 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAATATCTGTCTTGAA 68836692 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || |||||||| || |||||||||||||| Sbjct 68836693 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 68836752 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | | ||||| || || Sbjct 68836753 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAG 68836809 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| ||| Sbjct 68837464 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTA 68837523 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||| || | | || || Sbjct 68837524 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTT 68837583 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 68837584 GGCGGACTCTCAATCA 68837599 >seq11 Length=102031526 Score = 116 bits (128), Expect = 5e-21 Identities = 178/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || || || || || || ||||| | ||||||||| Sbjct 85463756 GTGGCCGTCTTGACAAGGTTGAAGCCCACCTCACCACCAAATGTGCTCGCCTTCCAGTAC 85463697 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| ||| | | ||| || || | ||| || |||||||||| || Sbjct 85463696 TCTGGAGAACAGATGGGGTTTCCTAAGAGGCCCTTAAGGGAGAAAGGAGCCCCCATTTCT 85463637 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 85463636 ATCATACTCTCCCCAAAGATGGAGTTAGGATGGCACTTCTCAA-GAAGTAGCCCCGGGTA 85463578 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 85463577 GAATTCCAAAGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 85463518 Query 9172 ACCTACAAGCG 9182 |||| |||||| Sbjct 85463517 ACCTGCAAGCG 85463507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722918347393200