Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq18 114 5e-20 seq26 104 9e-17 seq9 102 3e-16 seq11 100 1e-15 seq15 89.7 2e-12 seq3 89.7 2e-12 >seq18 Length=67558079 Score = 114 bits (126), Expect = 5e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || | || || || || |||||||| || || | || Sbjct 35524510 ATGCAGATTTTCGTGAAGACCCTAAGGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 35524451 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 35524450 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 35524391 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 35524390 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 35524331 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 35524330 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 35524293 >seq26 Length=53792517 Score = 104 bits (114), Expect = 9e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||| | || || ||||| || || || | |||||||| || || | || |||| Sbjct 43958127 ATTTTCATGAAGACCCTGACAGGGAAGACCACCACTCTTGAGGTCGAGCCCTCGGATACA 43958186 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 | ||| | | || || || || ||||||||||||||||||||||| || ||| | Sbjct 43958187 ACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 43958246 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || || || ||||| ||||||||| | |||||| | || || || ||| | Sbjct 43958247 CTGATCTTTGTTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAA 43958306 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | || ||||| |||| || ||||| Sbjct 43958307 AAGGAGTCCACTCTTCATCTAGTGTTGAGACT 43958338 >seq9 Length=91317560 Score = 102 bits (112), Expect = 3e-16 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 |||||| |||||| | || | |||| ||||||| ||||| ||||| ||||| ||| || Sbjct 4484973 TCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTTTCTGCTGT 4485032 Query 452374 TGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACAATTACTAATGATAAAAACCGTTTA 452431 || || | || | |||||| |||| || ||||| || ||||||||||| ||| || Sbjct 4485033 GGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACCATCACTAATGATAAGGGCCGCTTG 4485090 Query 452432 TCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 || ||||| |||||| ||||| | |||||||| |||| ||| | ||| ||||| Sbjct 4485091 AGCAAGGAAGACATTGAACGCATGGTTCAAGAAGCAGAGAAATACAAAGCTGAAGATGA 4485149 Score = 96.9 bits (106), Expect = 1e-14 Identities = 132/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 |||||| |||||| | || | |||| ||||||| ||||| ||||| ||||| ||| || Sbjct 4488188 TCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTTTCTGCTGT 4488247 Query 452374 TGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACAATTACTAATGATAAAAACCGTTTA 452431 || || | || | |||||| |||| || ||||| || ||||||||||| || || Sbjct 4488248 GGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACCATCACTAATGATAAGGGCCACTTG 4488305 Query 452432 TCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 || ||||| |||||| ||||| | |||||||| |||| ||| | ||| ||||| Sbjct 4488306 AGCAAGGAAGACATTGAACGCATGGTTCAAGAAGCAGAGAAATACAAAGCTGAAGATGA 4488364 >seq11 Length=102031526 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 88358696 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 88358637 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 88358636 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 88358584 >seq15 Length=79227551 Score = 89.7 bits (98), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || | || || || || ||||||||||| | || || || || || Sbjct 33884940 GTTACCAACGCTGTTGTCACCGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 33884881 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||||| | || || |||||||| || ||||| || || || Sbjct 33884880 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 33884821 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 33884820 GCTGCTATTGCCTATGG 33884804 Score = 84.2 bits (92), Expect = 9e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||| |||||||| ||||| ||||| || || || | ||| || || Sbjct 33883497 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 33883438 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 ||| |||||| || |||| |||||| |||||| | || | |||| ||||||| || Sbjct 33883437 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 33883378 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407 ||| ||||| ||||| ||| || || || | || | |||||| |||| || ||||| Sbjct 33883377 TGGCATTCTCAATGTTTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 33883320 Query 452408 ATTACTAATGATAA 452421 || ||||||||||| Sbjct 33883319 ATCACTAATGATAA 33883306 >seq3 Length=114358107 Score = 89.7 bits (98), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACAC-TGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 ||| | ||||| || || || | |||| || || || || ||||| | || || | || Sbjct 18938779 ATGCAGATTTTTGTGAAGACTCCTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTC 18938838 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || |||| | | | || || || ||||||||||||||||||||||| || Sbjct 18938839 GGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 18938898 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || || || ||| | ||||||||| ||||| | || || || Sbjct 18938899 GCAAAGACTGATCTTTGTTGGCAAGCAAGTGGAAGATGGACATGCTTTGTCTGACTACAA 18938958 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| ||||| || ||||| Sbjct 18938959 CATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGACT 18938997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973452857293784