Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 4e-15 >seq11 Length=102031526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| ||||| ||| |||| | Sbjct 34875778 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCATTGCAAACATG 34875837 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || | |||| | ||| ||||||||||||||||||| || | | | | ||| Sbjct 34875838 TCACCAACCGGAGCTGGGCCAACACCAACAAACATCTCCAGGAACTCAG-ACCCGTTCAT 34875896 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || || || | || ||| ||||| ||||| || || Sbjct 34875897 GGTGATGAAGGGCACACGAGCCTCCCCTGCGGTTGCCTTGGCTAGAAGCGTCTTGCCAGT 34875956 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA-TC 9609 || || ||| | ||| ||||| |||| |||||| ||||| ||| | |||| | Sbjct 34875957 ACTGGGAGAACCTGTGAGCAGGGCTCCCCTTGGAATTTTGGCCCCAAGGTCCTAGTACTG 34876016 Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | |||| ||| || |||| ||||| ||| Sbjct 34876017 TTTGGGGTT-CTTCAGGAAATTCACAAACTC 34876046 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 116969 CATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATC 117026 ||||| ||| ||| || ||| || || |||| ||||||||||||||| |||||||| || Sbjct 79380050 CATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTC 79380109 Query 117027 AAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 || ||| ||||||||||||||||||||||| Sbjct 79380110 CAGTGAAATATTTTCCATAAAGTCAAATGGATT 79380142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589320773729520