Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq23 161 8e-34 seq15 122 7e-22 seq18 100 2e-15 seq11 96.9 3e-14 seq26 89.7 4e-12 >seq23 Length=51751091 Score = 161 bits (178), Expect = 8e-34 Identities = 374/554 (68%), Gaps = 16/554 (3%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||||| || || | || |||| || Sbjct 26598035 GCCATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAG 26598094 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || || || ||| | ||||| || ||||| | ||||| Sbjct 26598095 GTGGAGATCATTGCCAACGACCAGGGCAACCGCACTACCCCCAGCTATGTGGCCTTCACC 26598154 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 || || || | | | || ||||| || || | || ||||| || ||||| Sbjct 26598155 GATACAGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCA-TG--AATCCCCAG 26598211 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || ||| | |||||||| |||||| | || || |||| ||||||||| | ||| || Sbjct 26598212 AACACTGTCTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTTGTGCAA 26598271 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTG 550286 |||||||||| | ||||||||||||| | | |||| || || || | || || Sbjct 26598272 TCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAATG 26598331 Query 550287 AAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | |||| | | ||| | ||| |||| || || |||| || |||||||| Sbjct 26598332 GTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTCTATGGT 26598387 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403 | | || ||||| | || || || ||| |||| | | | || || |||| | Sbjct 26598388 ACTGACTAAGATGAAGGAGACTGCTGAGGCATTT-TTGGGCTACACTGTCACCAATGCTG 26598446 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 26598447 TGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTG 26598506 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| | Sbjct 26598507 TTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCT 26598566 Query 550524 ATGGACTTGATAAA 550537 |||| | |||||| Sbjct 26598567 ATGGCTTAGATAAA 26598580 >seq15 Length=79227551 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || ||||| |||||||| || ||||| ||||| Sbjct 33884940 GTTACCAACGCTGTTGTCACCGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 33884881 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 33884880 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 33884821 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 33884820 GCTGCTATTGCCTATGG 33884804 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || |||| || || ||| Sbjct 33885759 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 33885700 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || ||| Sbjct 33885699 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACT 33885640 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | |||| | | ||||| ||||| || || Sbjct 33885639 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 33885580 Query 550178 TTTG 550181 |||| Sbjct 33885579 TTTG 33885576 >seq18 Length=67558079 Score = 100 bits (110), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 35524302 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 35524359 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 35524360 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 35524419 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | | || ||||| | || | Sbjct 35524420 GGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCT 35524479 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || || |||||||| ||||| Sbjct 35524480 TCCCCCTTAGGGTCTTCACGAAAATCTGCAT 35524510 >seq11 Length=102031526 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 88358696 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 88358637 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 88358636 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 88358584 >seq26 Length=53792517 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 43958329 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACATCCATCTT 43958272 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 43958271 CCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 43958212 Query 563384 GAATTTT 563390 | || || Sbjct 43958211 GGATCTT 43958205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4024562942124020