Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 1e-10 >seq3 Length=114358107 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 2259 TGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGG 2318 || |||||||| |||||||| ||||| ||| |||| ||||| ||| |||| |||| ||| Sbjct 9220548 TGTGAGATCCAGCTGACCTGCTCTGTGGAGAATCCAAATGATAACGTCTCATTCAGGTGG 9220607 Query 2319 GAGGCCTTG--GGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCA 2376 ||| ||| || || | || | || | || ||| | | ||||||||||||| Sbjct 9220608 CAGG--TTGCAGGAAATCCATATCATAGTGAAACAAATCTCTCTATATCCTGGGACCCCA 9220665 Query 2377 GGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTT 2436 || | |||||| ||| ||| || ||||| || || || |||| ||| | | || | Sbjct 9220666 AGAGCCTCAGTGAAGAGACCTATACCTGCATAGCTGAGAATCCTGTCAGCTCTTTATCCT 9220725 Query 2437 TCACGGTCTCGGCCCAGA 2454 | | ||||| | | ||| Sbjct 9220726 CCTCTGTCTCTGACAAGA 9220743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628579205152080