Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq19 95.1 1e-14 seq17 93.3 3e-14 seq3 84.2 2e-11 seq11 82.4 6e-11 >seq19 Length=68041221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| || || || || || |||||||| | Sbjct 35860125 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 35860184 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| ||||| || ||||| || | | ||| || || || ||| Sbjct 35860185 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 35860244 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| | || | |||||| | ||||| Sbjct 35860245 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 35860304 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || |||||||| | || || || || || ||||| Sbjct 35860305 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 35860351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || |||||||| | | ||| | | |||| |||| ||| Sbjct 35859921 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 35859980 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| || || || ||||||||||| ||||| || || || Sbjct 35859981 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 35860040 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | || || || || |||| || |||||||| Sbjct 35860041 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTC 35860100 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 35860101 AGGGTCTTCACGAAGATCTGCAT 35860123 >seq17 Length=72096382 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | || | |||| |||| || Sbjct 46150763 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGT 46150704 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || || ||||||||||| ||||| || || Sbjct 46150703 TTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTC 46150644 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || ||||||| ||||| || || Sbjct 46150643 ACCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTG 46150584 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || |||||||| |||||||| || Sbjct 46150583 AGGGTCTTTACAAAGATCTGCATTGT 46150558 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | || | |||| |||| || Sbjct 46151219 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGT 46151160 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || || ||||||||||| ||||| || || Sbjct 46151159 TTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTC 46151100 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 46151099 GCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTC 46151040 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 46151039 AAGGTCTTCACGAAGATCTGCAT 46151017 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | || | |||| |||| || Sbjct 46151447 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGT 46151388 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || || ||||||||||| ||||| || || Sbjct 46151387 TTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTC 46151328 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 46151327 GCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTC 46151268 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 46151267 AAGGTCTTCACGAAGATCTGCAT 46151245 >seq3 Length=114358107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || ||||||||||| || || || ||||| || ||||| || | | || |||| Sbjct 18938991 AACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCATGTCCATCT 18938932 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || |||| |||| | || || || || ||||| ||||| ||||| Sbjct 18938931 TCCACTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCC 18938872 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || ||||| ||||| || || || | || || | ||||||| || Sbjct 18938871 TGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCGACCTTGAGAGTGATGGTC 18938812 Query 101438 TTGCCGGTTA-AAGTTTTTACAAATATCTGCAT 101469 || || || | ||| || ||||| |||||||| Sbjct 18938811 TTCCCTGTCAGGAGTCTTCACAAAAATCTGCAT 18938779 >seq11 Length=102031526 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| ||||||||||| || ||||| |||| | || |||||||| ||||| |||| || Sbjct 16973571 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTTT 16973512 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||| || || |||||| |||||| | || || | || ||||| |||||| Sbjct 16973511 TATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGA 16973452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395846156610786