Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8 343 2e-89 seq1 167 3e-36 seq9 98.7 1e-15 >seq8 Length=117296131 Score = 343 bits (380), Expect = 2e-89 Identities = 672/986 (68%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || || Sbjct 54544937 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGTGTCGAATTTGTTGGC 54544878 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||| || || || | ||||| ||||| || Sbjct 54544877 AAACAAGTGGTGCACGTGCAACAG---CCAGTTCAAATCACCAGCTCCGAAAACGCACAC 54544821 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 54544820 AGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 54544761 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| ||||| |||||||| || |||| || || | Sbjct 54544760 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACATGTCATACTTTTG 54544701 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | | Sbjct 54544700 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 54544642 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| ||||| || | ||| ||||| |||| | ||| || | | | Sbjct 54544641 CATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGA 54544582 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || || | || || || || || ||||| || || | ||| Sbjct 54544581 GCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGCCTGAAAACAGAGGTG 54544522 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 54544521 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATTCACGACT 54544463 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | |||| || | |||||| | ||||| ||||| || Sbjct 54544462 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTCTCTCCGTTTCTAGGTTG 54544403 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | | || |||| | |||| || || ||||| || || | ||||| Sbjct 54544402 TTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 54544343 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| || ||| || |||||| | Sbjct 54544342 TCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCATCCGGTAGAGGTCCTGC 54544283 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | | Sbjct 54544282 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGA 54544223 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA---CCACCGCCAGAAAGAAC 160826 ||||| |||||||| ||| ||| || || |||| || | | | |||| |||| | Sbjct 54544222 CTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAGCTGCAGCCAAAAAGGA- 54544164 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 || || | |||| |||||||| | ||||| | ||||||||| ||||||||| Sbjct 54544163 --GTTCTCTGATTTTCTATCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCC 54544106 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 54544105 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 54544046 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 || || | ||| || ||| || | | | | || || ||| ||||||| ||| || Sbjct 54544045 AATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAA 54543986 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 | || || | |||||||| ||||| Sbjct 54543985 GCGCAGTCACCAGTCATGTTTATATA 54543960 >seq1 Length=157394656 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 51624177 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 51624118 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 51624117 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGAGTCCC 51624058 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||||||||| Sbjct 51624057 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 51623998 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 51623997 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 51623938 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 51623937 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 51623878 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 51623877 ACATCCTGGGTCACCAC 51623861 Score = 114 bits (126), Expect = 1e-20 Identities = 160/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 51627257 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 51627202 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || ||||| || ||||| | || | ||||| | ||| ||| |||||||| Sbjct 51627201 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCATT 51627142 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | || || ||||||||||||||||| || | || |||||| | || Sbjct 51627141 GGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAGAT 51627082 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || | ||||| Sbjct 51627081 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGACATTTA 51627041 >seq9 Length=91317560 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 42518131 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 42518190 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| ||| |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 42518191 CTAGCTCACTTGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 42518250 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 42518251 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 42518310 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| ||| || || |||| |||||||||||||| | | ||| || | Sbjct 42518311 TGTAGAGCTTTTCTGTGATATAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 42518370 Query 176422 TACA 176425 | || Sbjct 42518371 TGCA 42518374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576573450450480