Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23 203 2e-46 seq15 136 3e-26 seq6 134 1e-25 seq19 104 2e-16 >seq23 Length=51751091 Score = 203 bits (224), Expect = 2e-46 Identities = 721/1108 (65%), Gaps = 23/1108 (2%) Strand=Plus/Minus Query 281750 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 281809 ||| ||| ||| ||||| |||| ||||| ||||| ||||| || ||||| || || | Sbjct 26599163 CCATCAA-AATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCATCGGGGTTGATG 26599105 Query 281810 GTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAAT 281868 | | || || | |||||| || | | || || | | | |||||||| || Sbjct 26599104 CTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA-ACCTTAGGGAT 26599046 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 |||| || ||||| ||||| ||||| ||||| | | | |||||||| || | ||| Sbjct 26599045 TCGAGTAGAGCCTCCTACTAAGACAATGTCATGGATTTTAGCTTTATCCATCTTGGCATC 26598986 Query 281929 CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTC 281988 | | | | || || || || || || | ||||||| ||||| ||| | ||||| Sbjct 26598985 CCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGCACACAACTCTTC 26598926 Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046 || ||||| || || || | || || ||||| |||||| | | || |||| | Sbjct 26598925 AAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCGTAAAGTGAGTCAATT 26598868 Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106 || | | | || || ||| || || | | || || | ||| || || || | Sbjct 26598867 TCCAAGTTTGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTTTCGCAGGCAGTGCGC 26598808 Query 282107 AGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAA 282162 | | | | || |||| | ||| |||| || | |||| ||| |||||||| Sbjct 26598807 AACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATGTTTCCTCTTGAA 26598752 Query 282163 ATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATT 282222 ||||| ||| | | ||||| | || |||||||| || || ||||| | || | Sbjct 26598751 CTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCACCCAAGTGGGTGTC 26598692 Query 282223 TCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATG 282282 || | || || | || | |||| ||||| || | | || | | |||||| Sbjct 26598691 CCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGACGGACACATCAAA 26598632 Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGTTTTTATCA 282340 || || ||||||| |||||| || | |||| || || || || | || ||| | | | Sbjct 26598631 TGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGTTCTCCCTGGCCTGCTTTATCT-A 26598573 Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 || ||||| |||| ||||||||||| |||||||| |||||||| | ||||| ||||| Sbjct 26598572 AG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTAGCACATTGAGACCT 26598514 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 || || |||||||| || ||||| || | ||| || || || || || || || ||| Sbjct 26598513 GCGATAACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAGTAGGCTGGCACA 26598454 Query 282461 GTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 || || || |||| || || | || | | | || || || | ||||| ||| Sbjct 26598453 GTGATCACAGCATTGGTGACAGTGTAGCCCAAAAATGCCTCAGCAGTCTCCTTCATCTTA 26598394 Query 282521 CTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT--CATTTTGATATG 282578 | | | ||| || || |||| || ||| || | |||| || | |||| || | Sbjct 26598393 GTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTCCCCTTTG-TAGG 26598336 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | || | | || || || |||| || |||| || |||||| |||||||| Sbjct 26598335 ACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGGAAAGGCCAAAGTTTCATAT 26598276 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 ||||||| ||| | |||||||| | ||| || || | ||||| |||||||| | || Sbjct 26598275 CTGATTGCACAACAGGATCATTAAATTTTCTGCCGATCAGACGTTTGGCATCAAAGACAG 26598216 Query 282699 TATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCT 282758 | || ||||| | || | || | ||||| ||||| || || || | ||||| | Sbjct 26598215 TGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGCTCTGTAT 26598156 Query 282759 CTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAA 282818 | || || | ||||| || || ||||| || || || || || ||||| || || | Sbjct 26598155 CGGTGAAGGCCACATAGCTGGGGGTAGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCCA 26598096 Query 282819 CTTTACCATTTTGCCATACACCTACACA 282846 | || |||| || | || || ||||| Sbjct 26598095 CCTTGCCATGCTGGAACACCCCCACACA 26598068 >seq15 Length=79227551 Score = 136 bits (150), Expect = 3e-26 Identities = 371/561 (66%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 281828 || || | ||||| ||||||||||| |||||||| || | | | ||| |||| || | Sbjct 33884146 GATTACCTGCACCGTATGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCCTTCC 33884205 Query 281829 CATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACT 281887 ||||||| || | ||||||| ||| | ||| || || || | ||| || ||||| Sbjct 33884206 CATTGAAGAAGTCCTGGAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAGCCACCAACC 33884264 Query 281888 AATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACG 281947 || ||||| ||||| | ||| || || |||||||| | |||| | |||| || || Sbjct 33884265 AAGACAATATCATGAATCTGAGACTTGTCCAGTTTGGCATCCCGAAGGGCTTTCTCCACA 33884324 Query 281948 GGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA 282007 || || || | | |||||||| | | | |||||| || || | |||| | Sbjct 33884325 GGGTCCAGGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAACCGGGCACGGGTAATA 33884384 Query 282008 GTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 282067 | | || | || |||||||| | | ||||||| ||||| | | || || Sbjct 33884385 GAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTG 33884444 Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTT 282123 ||||| || | || |||||||| ||||| || || | || | || | || ||| Sbjct 33884445 GAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGAAGGCGACGGACAGCCCTCTTG 33884504 Query 282124 TGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TT 282181 | || | |||| ||| | || | ||| | |||||| ||| ||| | | ||| | Sbjct 33884505 TTCTCACTGAT----ATCCTTCTTGTGTTTACGCTTGAACTCTGCAATAAA--ATGGTTG 33884558 Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || | || || ||||| ||||| || ||||| | ||||| ||| | |||| | | || Sbjct 33884559 ACCATGCGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCTCCAGCTGTAGATTTGACC 33884618 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | |||||| |||| || | | | |||||| || |||||||| | |||| Sbjct 33884619 TCAAAGATTCCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCACCACCTAAATCA 33884678 Query 282302 AAAATAAGTACATTCATTTCT 282322 || || || ||||| ||||| Sbjct 33884679 AAGATCAGCACATTTCTTTCT 33884699 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 33884792 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 33884851 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 33884852 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAATAG 33884911 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||| || Sbjct 33884912 GCAGGTACGGTGACAACAGC 33884931 >seq6 Length=124183866 Score = 134 bits (148), Expect = 1e-25 Identities = 738/1169 (63%), Gaps = 46/1169 (4%) Strand=Plus/Minus Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | |||||||| ||||| | |||| ||||||||||||||||| | || | Sbjct 93091687 TCATGACTCCACCAGCAGTTTCAATTTCAAGGGAAAGAGGAGTGACATCCAACAGCAGCG 93091628 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | ||||| |||||| | | ||| |||| ||| ||| | || | ||| |||||| Sbjct 93091627 AGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATTGCTACCTGGACAGCTGCACCA 93091569 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||| ||| ||| |||| || | | ||| |||| ||| ||| |||| || | Sbjct 93091568 TATGCAAGAGCCTCACCAGGGTTGATGCTCCTATTCAGTTCTTTCCCACTGAAGAAGTCC 93091509 Query 281843 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||||| ||| | ||| || || | | ||| || || || || ||||| || | Sbjct 93091508 TGGAGAAGTT-TCTGAATCTTGGGGATGCAGGCTGAGCCACCCACCAAGACAATATCGCG 93091450 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || || ||||| || | |||| | |||| || || || || || | Sbjct 93091449 GATCTGAGACTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCACAGGGTCCAGGGTGCC 93091390 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 | ||||| || | | | |||||| ||| | ||| ||| Sbjct 93091389 ACGGAACAAATCAGCATTCAATTCTTCAAATC--------GGAAGT-TGA---------- 93091349 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||||||| | | ||||||| ||||| | | || || ||||| || || Sbjct 93091348 --TTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAGAGACTGCG 93091291 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137 |||||| | ||| | || || | || | | | || || | || | |||| Sbjct 93091290 CTTAGCAAGCTCAGAAGCAGTACGGAGGCAACAGACAGCCCTCTTGTTCTCACTGAT--- 93091234 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | ||| |||||||| ||| ||| | | | || | ||| |||| Sbjct 93091233 -ATCCTTCTTGTGTTTGCTCTTGAACTCTGCAAAGAAACGGTTGACCCTGCCATTGTCAA 93091175 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 ||||||| || ||| |||| ||| | ||| | | || | || | || ||| | Sbjct 93091174 AATCTTCTCCAGACAA----GTATCTCCAGCTATAGATTTGACCTCAAAGATTCTATCCT 93091119 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| || || | | |||||| | |||||||| | |||||| || || ||||| Sbjct 93091118 CAATAGTGAAGACTGACACATCAAAA-TGCCACCACCTAAATCAAAGATCAGCACATTTC 93091060 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 | ||| | | ||||| || | ||||| |||| |||||||||| |||||||| | | Sbjct 93091059 TCTCTGTTCCAACCTTTTTGTCTAAGCCATAGGCAATAGCAGCAGCACTTGGTTCACTGA 93091000 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | ||||| | |||| ||||||||||| ||| |||||||| || || | | || | Sbjct 93090999 TGATTCTAAGTACATGGAGACCAGCAATAGTTCTAGCATCTTTGGTAGCCTCACGCTGAG 93090940 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 | |||||||| | ||||| || || | ||| || | || || || |||| | | Sbjct 93090939 AGTCGTTAAAGCAGGCAGGTACTGTGACAACAGCGTTGGTAACAGTCTTCCCAAGGCAGG 93090880 Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATT 282557 | ||| ||| ||| | || | | | ||| ||||| | | |||||| || | Sbjct 93090879 CTTCTGCGATTTCCTTCCTCTTTGTCAGGACCATGGATGACACCTCTTCTGGGTAAAAAC 93090820 Query 282558 GCTTGGATTCATT---TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 ||| ||| | ||| ||| ||||| || | ||| | | || |||| | Sbjct 93090819 TCTT--TTTCTCTCCCTTG-TATTCTACTTAAACCTTAGGTCTGCCAGCATCATTTGCCA 93090763 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | | || ||||||| |||| |||| || || ||| |||| ||| || ||| Sbjct 93090762 CCATGAAGGGCCAATGTTTCGTATCAGACTGGACAACAGCATCATCAAATCTTCATTCAA 93090703 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | | |||| |||||||||| | ||||| ||||||| | |||| | || || Sbjct 93090702 TAAGTTGTTTGGCATCAAAAACCATGTTGGTGGGATTAATCACGACTTGGTTCTTTGCAA 93090643 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 | || ||||||| | | || | ||||| | ||||| | | ||| || | | | Sbjct 93090642 CGTCACCAATCAATCATCCAGTATTAGTAAAAGTGACATA-GCTTGAGGTGGTTCAGTCC 93090584 Query 282795 CTTGATCATTCGCAAT-AATTTCAACTTT 282822 | |||||||| | ||| | ||||| |||| Sbjct 93090583 CCTGATCATTGGAAATGATTTTCACCTTT 93090555 >seq19 Length=68041221 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 44119686 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 44119627 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||||||| | | ||||| | Sbjct 44119626 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTACGA 44119567 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 44119566 GAAGCTTCTCATAAA 44119552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736236426418548