Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq19 154 3e-32 seq18 143 5e-29 seq26 136 8e-27 seq17 132 9e-26 seq11 123 5e-23 seq3 123 5e-23 seq1 113 9e-20 seq9 104 5e-17 seq7683 95.1 2e-14 >seq19 Length=68041221 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| ||||| | |||||| || || || ||||| || || ||||||| Sbjct 35860123 TACCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAG 35860182 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || || |||||||| || || || || || || | Sbjct 35860183 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGG 35860242 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || ||||| || || || ||| | || || | Sbjct 35860243 GAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCA 35860302 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| ||||| || || || |||||| Sbjct 35860303 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 35860352 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | ||| || || | |||||| || || || ||||| || || |||||||| Sbjct 35859897 CCACCCCTAAGACGAAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 35859956 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 35859957 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 35860016 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || ||||| Sbjct 35860017 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 35860076 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 35860077 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 35860123 >seq18 Length=67558079 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 35524302 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 35524361 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 35524362 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 35524421 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| || || || || | ||| || ||||| Sbjct 35524422 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 35524481 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | | ||||| || || |||||||| Sbjct 35524482 CCCCTTAGGGTCTTCACGAAAATCTGCAT 35524510 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| || || |||| || || || ||||| Sbjct 3835382 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGA--CTCTCTGGATGTTGTATTCAGA 3835325 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | || ||||| || ||||| || |||||||| || || || || ||| | || Sbjct 3835324 CAGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCTAGGGG 3835265 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || | || ||||| ||||| || || ||||| || || | ||| | || || || Sbjct 3835264 GATGCCCTTTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGGGTCACTGGGCTCCAC 3835205 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || ||||| | ||||| ||| | || || |||||||| Sbjct 3835204 CTCCAGGGGGATGGTCTT-ACGGTCAAGGTCATCACGAAGATCTGCAT 3835158 >seq26 Length=53792517 Score = 136 bits (150), Expect = 8e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 43958329 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 43958270 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||| ||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 43958269 AGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 43958210 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| | ||||| || || || || | ||| | ||||| Sbjct 43958209 ATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGGTGGTCTTC 43958150 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCA 82809 ||||||| ||||| | || ||||||| Sbjct 43958149 CCTGTCAGGGTCTTCATGAAAATCTGCA 43958122 >seq17 Length=72096382 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | ||||||||| || || ||||| || || || ||||| Sbjct 46150787 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46150728 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || ||||| || |||||||| | || || || ||||| || Sbjct 46150727 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 46150668 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| | || ||||| || || || ||| | || || || Sbjct 46150667 ATGCCTTCTTTTTCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 46150608 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || || || || || | ||||||||||| ||||||||| Sbjct 46150607 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 46150560 >seq11 Length=102031526 Score = 123 bits (136), Expect = 5e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| |||||||| ||||||| ||| |||||||| || || ||||| | |||||| Sbjct 42483436 CCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCC 42483495 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || ||||| || | || | | || Sbjct 42483496 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAG 42483555 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || |||| |||||||| ||||| || || ||||||||||| Sbjct 42483556 ATGCTCTTCCCTGTCAAGGTCTTCACGAAAATCTGCATTAT 42483596 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| | ||| || ||||||||||| |||||||| ||||| ||||| ||||||| Sbjct 16973572 CCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 16973513 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || | ||| |||| ||||| ||| Sbjct 16973512 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 16973453 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| | ||||| ||||| | || |||||||| Sbjct 16973452 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCAT 16973415 >seq3 Length=114358107 Score = 123 bits (136), Expect = 5e-23 Identities = 154/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| || ||||| || || || || || || || ||||| | | || ||||| Sbjct 18938988 ACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCATGTCCATCTTCC 18938929 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || ||| ||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 18938928 ACTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 18938869 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | |||||| ||| || ||||| || || || | | ||| || ||||| Sbjct 18938868 ATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCGACCTTGAGAGTGATGGTCTTC 18938809 Query 82782 CCTGTCA-ACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| ||||| |||||||| Sbjct 18938808 CCTGTCAGGAGTCTTCACAAAAATCTGCAT 18938779 >seq1 Length=157394656 Score = 113 bits (124), Expect = 9e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| | || || || || || || ||| | | | | | || ||||| ||||| || Sbjct 42367874 AGAGTGGGCTCCTTTTGAATGTTGTAGTCAAACAAAGTACATCCATCTTCCAGTTGCTTG 42367933 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||||||| || || ||| | |||| ||||||| | || ||||| || Sbjct 42367934 CCAGCAAAGATCAGTCTTTGGTGGTCAGGAAGAATTCGTTCCTTACCCTGGATCTTGGCC 42367993 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||| | || ||||| || | || || | ||| || ||||| |||||| Sbjct 42367994 TTTACATTTACTATTGTATCCGAGGGCTTGACCTCAAGAGTGATGGTCTTCACTGTCAGG 42368053 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| | || |||||||| Sbjct 42368054 GTCTTCATGAAAATCTGCAT 42368073 >seq9 Length=91317560 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 7013692 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 7013633 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || ||| | ||||| |||||||| | ||| ||||| || || Sbjct 7013632 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 7013573 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| |||| ||||| || Sbjct 7013572 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 7013538 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||||||||| ||||| ||| |||||||||| |||||||| |||||||| | || |||| Sbjct 7012385 AAGCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATG 7012326 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | || || | || || | || | || ||| | ||||||||||| || || || | Sbjct 7012325 GGTTAGCTGCCTTCGGCCCGTGGATTCAGAAATATCTCTGGTGGAAGCGATACCTGACCA 7012266 Query 60429 TAATGCA 60435 | |||| Sbjct 7012265 TGCTGCA 7012259 >seq7683 Length=5699132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || || ||||| | | | | |||| ||||| Sbjct 368169 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA----TCTTTCAGTTGC 368114 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| || || ||||| |||||||||| | || | ||| Sbjct 368113 TTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACCTTG 368054 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||||||||||| || | ||| || | || || ||| || ||||| || || Sbjct 368053 ACCTTTACATTTTCTATGGGATCTGAGGGCTTGACCTCAGGAGTGATGGTCTTCCCCATC 367994 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 367993 AGGGTCTTCACGAAAATCTGCAT 367971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980701345499822