Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19 127 2e-24 seq17 122 8e-23 seq542 100 3e-16 >seq19 Length=68041221 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 35859926 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 35859984 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 35859985 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 35860044 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| ||||||| || || | ||||| ||| ||||||||||| | Sbjct 35860045 TCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 35860104 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 35860105 TCTTCACGAAGATCTGCAT 35860123 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 35860154 GGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 35860212 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 35860213 CGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 35860272 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 35860273 TCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 35860332 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 35860333 TCTTCACGAAGATTTGCAT 35860351 >seq17 Length=72096382 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| ||||| || || Sbjct 46151669 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCG 46151610 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || ||||||||||| || || |||||| |||| Sbjct 46151609 GCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTCGCCTTG 46151550 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 46151549 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 46151490 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 46151489 TTCACGAAGATCTGCAT 46151473 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| ||||| || || Sbjct 46151213 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCG 46151154 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || ||||||||||| || || |||||| |||| Sbjct 46151153 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTCGCCTTG 46151094 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 46151093 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 46151034 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 46151033 TTCACGAAGATCTGCAT 46151017 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| ||||| || || Sbjct 46151441 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCG 46151382 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || ||||||||||| || || |||||| |||| Sbjct 46151381 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTCGCCTTG 46151322 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| ||||| |||| || Sbjct 46151321 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTC 46151262 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 46151261 TTCACGAAGATCTGCAT 46151245 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| ||||| || || Sbjct 46150757 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGTTTCCCG 46150698 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || ||||||||||| || || |||||| |||| Sbjct 46150697 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGGATCTTCACCTTG 46150638 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | |||| |||||| || || || || Sbjct 46150637 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTC 46150578 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 46150577 TTTACAAAGATCTGCAT 46150561 >seq542 Length=2881201 Score = 100 bits (110), Expect = 3e-16 Identities = 145/200 (73%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| |||||||| || || ||| | | | ||||| |||| |||| Sbjct 35931 GGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCA-TCCTCCAGCTCTTTGC 35989 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | | | | || || ||||||||||| || || ||||| |||| ||| || ||| || Sbjct 35990 CGGAGAAGATCAGACGCTGCTGGTCTGGTGGAATGCCCTCCTCGTCTTGGA--TTTGGCT 36047 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| ||| | ||||| ||||||| || || | ||| | ||| ||||| |||| Sbjct 36048 TTGACACTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCATCAGG 36107 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 36108 GTCTTCACAAAGATCTGCAT 36127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482879985065520