Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq8 266 4e-66 seq1 212 7e-50 >seq8 Length=117296131 Score = 266 bits (294), Expect = 4e-66 Identities = 661/997 (66%), Gaps = 15/997 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 54544953 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 54544894 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | ||| || | Sbjct 54544893 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAATCACCAG 54544837 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| ||||||||||||||||| || |||| || | Sbjct 54544836 CTCCGAAAACGCACACAGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 54544777 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 54544776 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 54544717 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | ||||| | || Sbjct 54544716 ACATGTCATACTTTTGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 54544657 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || || || || || | ||||||||| |||| || Sbjct 54544656 TGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 54544597 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || ||| | || | || || || || | Sbjct 54544596 TATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACGAAATAGGCACTGC 54544537 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 54544536 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 54544477 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597 |||| | ||||| | | ||| ||||||| | ||||| ||| || || | Sbjct 54544476 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTA-TGG--GATGGCATTC 54544420 Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| ||| ||| ||| |||| | || || || || | Sbjct 54544419 TCTCCGTTTCTAGGTTGTTCTCGCCCATCAACAGCTTGAGCTTCCTGACAATTTCCAGGT 54544360 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 54544359 TGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAAGTACTTCCAGCCTGCATTCA 54544300 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | ||| || ||||| | ||||| || || ||||| || || ||||| ||||| |||| Sbjct 54544299 TCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACA 54544240 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CAT 162833 | |||||||||| | | |||||||||||||||| ||| || || | || || || Sbjct 54544239 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAG 54544180 Query 162834 CA-CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | | |||| || | || || | ||| ||||| ||||| | || || | ||||| Sbjct 54544179 CTGCAGCCAAAAAGGAGTTC---TCTGATTTTCTATCCACGTGAATACAATAGAAATTCT 54544123 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 54544122 GAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 54544063 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 ||||||| ||||| || || || ||||| || ||| || | || ||| || |||| Sbjct 54544062 TAGAATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 54544003 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | | | | | || | || ||||| | |||||||| Sbjct 54544002 GCTTCTTGATGAAAGAAGCGCAGTCACCAGTCATGTT 54543966 >seq1 Length=157394656 Score = 212 bits (234), Expect = 7e-50 Identities = 240/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 51624182 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 51624123 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| ||||| | || || || ||| Sbjct 51624122 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAAGTAATGGTTGAGTTCATGA 51624063 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 51624062 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 51624003 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 51624002 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 51623943 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||||||||| | Sbjct 51623942 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 51623883 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 51623882 CTCTTACATCCTGGGTCACCAC 51623861 Score = 116 bits (128), Expect = 4e-21 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 51627260 ACAGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 51627203 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| | |||||||| || || Sbjct 51627202 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGATGACAGATGTTGTTCCA 51627144 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | || ||||| || || || || || || | |||||||| | Sbjct 51627143 TTGGGGTGTGAGACGATCTTGGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 51627084 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| | |||| |||||| | || Sbjct 51627083 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGACATTTAGGTGATCTTCAGATAAT 51627024 Query 171743 TCATAGTG 171750 | |||||| Sbjct 51627023 TTATAGTG 51627016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577784893660800