Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17 122 6e-23 seq18 93.3 3e-14 >seq17 Length=72096382 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46150787 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46150728 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 46150727 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 46150668 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | ||| || | |||||| || | ||||| Sbjct 46150667 ATGCCTTCTTTTTCTTGGATCTTCACCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 46150609 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| |||||||| || | || ||||||||||||||||| || Sbjct 46150608 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATTGT 46150558 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46151243 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46151184 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 46151183 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 46151124 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | ||| || | |||||| || | ||||| Sbjct 46151123 ATGCCTTCTTTTTCTTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 46151065 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46151064 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46151017 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46151471 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46151412 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 46151411 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 46151352 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | ||| || | |||||| || | ||||| Sbjct 46151351 ATGCCTTCTTTTTCTTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 46151293 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46151292 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46151245 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46151699 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46151640 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 46151639 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 46151580 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | ||| || | |||||| || | ||||| Sbjct 46151579 ATGCCTTCTTTTTCTTGGATCTTCGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 46151521 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46151520 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46151473 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46151015 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46150956 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 46150955 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 46150896 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 46150895 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 46150837 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46150836 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46150789 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46151927 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46151868 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 46151867 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 46151808 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 46151807 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 46151749 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46151748 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46151701 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46152155 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46152096 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 46152095 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 46152036 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 46152035 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 46151977 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46151976 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46151929 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 46152383 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 46152324 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 46152323 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 46152264 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 46152263 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 46152205 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 46152204 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46152157 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || || ||| ||| || || |||||||| || | Sbjct 46152613 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 46152554 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | | Sbjct 46152553 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 46152494 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || || || | | | || | |||||| || | ||| Sbjct 46152493 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 46152435 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 46152434 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 46152385 >seq18 Length=67558079 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 3834244 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3834185 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 3834184 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 3834125 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 3834124 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 3834066 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 3834065 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 3834018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 3834472 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3834413 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 3834412 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 3834353 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 3834352 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 3834294 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 3834293 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 3834246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 3834700 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3834641 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 3834640 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 3834581 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 3834580 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 3834522 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 3834521 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 3834474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 3834928 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3834869 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 3834868 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 3834809 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 3834808 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 3834750 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 3834749 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 3834702 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 3835156 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3835097 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 3835096 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 3835037 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 3835036 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 3834978 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 3834977 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 3834930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328345463852160