Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 120 7e-22 seq26 114 3e-20 seq17 105 2e-17 seq1 98.7 2e-15 seq3 96.9 8e-15 seq11 86.0 1e-11 >seq18 Length=67558079 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || || || |||||| | || || || || || ||| | ||| |||||| ||| Sbjct 35524483 GGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGATACAATAGAAAATGTAAAGGCCAAG 35524424 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || || || ||||||||| || ||| |||||||| ||||| || || ||||| Sbjct 35524423 ATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAA 35524364 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||||| | |||||| | || |||||| | || || ||||| |||||||| || Sbjct 35524363 CTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTA 35524304 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 35524303 GTGTTGAGACTTCG 35524290 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 35524290 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 35524349 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 35524350 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 35524393 >seq26 Length=53792517 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || | |||| | || || || || || ||| ||| Sbjct 43958136 AAGACCCTGACAGGGAAGACCACCACTCTTGAGGTCGAGCCCTCGGATACAACAGAAAAT 43958195 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 43958196 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 43958255 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 43958256 GTTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 43958315 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 43958316 ACTCTTCATCTAGTGTTGAGACTTCG 43958341 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 43958341 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 43958282 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || | ||||| || | ||| || Sbjct 43958281 CATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 43958238 >seq17 Length=72096382 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| |||||| |||| ||||| |||| Sbjct 46150564 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 46150623 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| |||||||||||||| || || ||| || Sbjct 46150624 ACCATCGAGAATGTCAAGGTGAAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCAGCAG 46150683 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| || ||| |||| ||||| | || || | || |||||| || Sbjct 46150684 AGGTTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATC 46150743 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 46150744 CAGAAGGAGTCCACTCTGCACCTGGT 46150769 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 46151497 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCG 46151556 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| |||||||||||||| || || ||| || || || ||||| ||||| || Sbjct 46151557 AAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAA 46151616 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || || | || |||||| ||||||| ||||| ||||| ||| Sbjct 46151617 CAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCAC 46151676 Query 206374 CTTGT 206378 || || Sbjct 46151677 CTGGT 46151681 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 46151041 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCG 46151100 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| |||||||||||||| || || ||| || || | ||||| ||||| || Sbjct 46151101 AAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAA 46151160 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || || | || |||||| ||||||| ||||| ||||| ||| Sbjct 46151161 CAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCAC 46151220 Query 206374 CTTGT 206378 || || Sbjct 46151221 CTGGT 46151225 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| |||| ||||| |||||| |||| || ||| Sbjct 46151269 ACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCG 46151328 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| |||||||||||||| || || ||| || || | ||||| ||||| || Sbjct 46151329 AAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAA 46151388 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || || | || |||||| ||||||| ||||| ||||| ||| Sbjct 46151389 CAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCAC 46151448 Query 206374 CTTGT 206378 || || Sbjct 46151449 CTGGT 46151453 >seq1 Length=157394656 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || | || ||| ||||| | || ||| |||||||| ||||| Sbjct 42367998 GTAAAGGCCAAGATCCAGGGTAAGGAACGAATTCTTCCTGACCACCAAAGACTGATCTTT 42367939 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| || |||||| | || || ||| | Sbjct 42367938 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTTTGACTACAACATTCAAAAGGAGCCC 42367879 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 ||||||| ||||| ||||||||| Sbjct 42367878 ACTCTTCCTCTTGTGTTGAGACTT 42367855 >seq3 Length=114358107 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 || ||||| || || |||||| | | || || || || ||| | ||| |||| | Sbjct 18938801 CTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTCGGATACAATAGAAGATGTAATG 18938860 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| || || || ||||||||| || ||| |||||||| ||||| | || Sbjct 18938861 GTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGTTGGC 18938920 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 ||||| ||||||||||| ||||| | || |||||| | || || ||||| |||||| Sbjct 18938921 AAGCAAGTGGAAGATGGACATGCTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTT 18938980 Query 206371 CACCTTGTTTTGAGACTT 206388 || | || ||||||||| Sbjct 18938981 CATTTAGTGTTGAGACTT 18938998 >seq11 Length=102031526 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/132 (75%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| ||| |||||||| || || |||||||| ||||| Sbjct 16973490 GTAAAGGCCAAGATCCAAGATAAAAAAGGAATTCCTCCCGATCAGCAAAGACTGATCTTT 16973549 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||||| | ||||| || ||||| | || || ||||| Sbjct 16973550 GCTGGCAAGCAATTGGAAGATGGATGTACTTT----GACTACAA--TGCAAAAGGAGTCC 16973603 Query 206365 ACTCTTCACCTT 206376 |||||| ||||| Sbjct 16973604 ACTCTTTACCTT 16973615 Score = 84.2 bits (92), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||| || || ||| |||||||| ||| | Sbjct 42483518 GTAAAGGCCAAGATCCAGGATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTT 42483459 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||||| | | ||||| || | |||||| | || || ||||| Sbjct 42483458 GCTGGCAAACAACTGGAAGATGG-ATGTCTTTGACCAACTACAACATTCAAAAGGAGTCC 42483400 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||| ||| Sbjct 42483399 ACTCTTCATCTTGTGCTGAGACGTCG 42483374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180465614213658