Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 288 1e-72 seq24 156 5e-33 seq16 145 9e-30 seq22 131 2e-25 >seq1 Length=157394656 Score = 288 bits (318), Expect = 1e-72 Identities = 255/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 51623861 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 51623920 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 51623921 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 51623980 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 51623981 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 51624040 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||| Sbjct 51624041 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTG 51624100 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 51624101 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 51624160 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 51624161 ATAGCCTGCCTCACTCTCT 51624179 Score = 188 bits (208), Expect = 8e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || ||||| || |||||||| | ||| || ||||| || |||| || Sbjct 51626995 GTACAGCCCACAGTATTTCTTCACTATAAATTATCTGAAGATCACCTAAATGTCACTTGC 51627054 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | ||||| | || ||||||| ||||| Sbjct 51627055 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAAGTCTCTGGGTCAGGGATTGAG 51627114 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| | || | | || || | |||||||| || ||||| | ||| | ||||| Sbjct 51627115 AACAGTACCAAGATCGTCTCACACCCCAATGGAACAACATCTGTCATCAGCATCCTCCAG 51627174 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 51627175 ATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 51627234 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||| ||||||||||| | ||| |||| Sbjct 51627235 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTA 51627271 >seq24 Length=62255461 Score = 156 bits (172), Expect = 5e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| || ||||| Sbjct 34164318 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAA 34164259 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||| |||||| || |||||||| | Sbjct 34164258 GGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATT 34164199 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| || || || | Sbjct 34164198 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGA 34164139 Query 147162 GGGG 147165 |||| Sbjct 34164138 GGGG 34164135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || || || |||| || || ||||| Sbjct 34161935 GCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTGTTG 34161876 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||||| ||| ||||| || ||||||| Sbjct 34161875 GAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCC 34161816 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 34161815 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 34161783 >seq16 Length=80959047 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 4492692 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 4492633 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || ||||| |||||||| || |||| Sbjct 4492632 TGCCACAGGCTGAGAACCA------------TGGGCCTGACATCAAGGAGCACGTGAACT 4492585 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 4492584 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 4492538 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 4490384 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4490325 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 4490324 TAGAATCCTACATGACAACGAAGATG 4490299 >seq22 Length=61117494 Score = 131 bits (144), Expect = 2e-25 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| || || |||| || | ||||||| ||||| | | |||||| Sbjct 52210885 GTACTCCCTGGTATTCATGATTGGCCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 52210826 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 52210825 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 52210766 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | |||| || || || |||||||||| | || |||| | Sbjct 52210765 TGTGCTCTTCCTAGTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAA----AGA 52210712 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||||||||||||||||| | || || | || ||| |||| Sbjct 52210711 GTGGGTTTTTGGCCACCACATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 52210652 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||| ||||| | ||| ||||||| || | || |||| Sbjct 52210651 CAGCGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 52210592 Query 8910 GGTG 8913 ||| Sbjct 52210591 CGTG 52210588 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 52307691 GTACTCGGTGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 52307750 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 52307751 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 52307810 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 52307811 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 52307843 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 52210172 TGGACCTGGCCATGCTGGTGACCGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 52210113 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 52210112 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 52210083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582835237387200