Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq16 109 8e-19 >seq16 Length=80959047 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | || ||||| || ||||| || | | || | ||| | | Sbjct 68835855 AGATGATTAATGGAGAGATGTATCCTCCCACTGTCAAAGATACTCAGGTTGAAATGATCT 68835796 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 || ||| |||| ||| | || | |||| || |||| | ||| | ||||| || Sbjct 68835795 ACCCACCTCATATTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 68835737 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| |||| |||| || |||||| | || |||||||| || || || Sbjct 68835736 GTGCCTGGTCTGATGATGTATGCCACCATTTGGCTGCGGGAACACAACAGAGTGTGTGAT 68835677 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| ||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 68835676 GTGCTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 68835628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722531580563520