Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 123 3e-23 seq11 120 4e-22 seq14 107 3e-18 seq2 89.7 7e-13 >seq15 Length=79227551 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 47744673 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 47744732 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 47744733 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 47744792 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 47744793 TTTCTTATACCAT 47744805 >seq11 Length=102031526 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 79381645 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 79381704 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 79381705 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 79381764 Query 39759 CAAC 39762 | || Sbjct 79381765 CTAC 79381768 >seq14 Length=93702490 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||||||||| || || | || || Sbjct 71995164 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 71995105 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 71995104 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 71995045 Query 39761 AC 39762 || Sbjct 71995044 AC 71995043 >seq2 Length=128023632 Score = 89.7 bits (98), Expect = 7e-13 Identities = 236/356 (66%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 111181809 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 111181868 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 || || ||| |||| |||| | | || ||||| || ||| ||| ||| | || | Sbjct 111181869 TGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 111181928 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | || | || |||| ||| || ||||||||||| Sbjct 111181929 TTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACCAACATTTCCTCTATAATCTTC 111181988 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || || |||||||||| || |||| | ||| || || | |||||| Sbjct 111181989 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 111182048 Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643 | ||||||||| || || | | ||| |||| || ||||| | ||| || Sbjct 111182049 CACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA-CAA-GCACT 111182106 Query 37644 TTCTCCA--GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 ||||||| || | | || ||||| || || || || | ||||| ||| |||| Sbjct 111182107 TTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCCCACGGC 111182162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686140337952720