Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1650 118 8e-22 seq11 107 2e-18 seq19 91.5 1e-13 seq14 86.0 5e-12 >seq1650 Length=1875249 Score = 118 bits (130), Expect = 8e-22 Identities = 296/445 (67%), Gaps = 15/445 (3%) Strand=Plus/Minus Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300 |||| || |||| || || | ||| |||| || |||||| | |||| | || || | Sbjct 1761819 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTAAATCCCGAATGGCCAG 1761760 Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360 | | |||| ||| || |||| || || | ||||||| | |||||| | Sbjct 1761759 GAACATGCATCCACTGAATGTCCATGCCCCGCGCCAGCCGCTCCAGCTCCGCAAAGTCCT 1761700 Query 77361 CCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTCT 77417 |||| ||| || || ||||| | ||| | ||||||||| |||||||||||| || Sbjct 1761699 CCTTATTGGTCACCT---CCTCC-CGGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCCT 1761644 Query 77418 TAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCT 77477 | ||||| | || | |||||| |||||||||| ||||||| |||||||| Sbjct 1761643 TCACCCAGGT-GTGATGCCATTG-------ACATGCTGTCCGTGTAGAGAACCAGCTTAG 1761592 Query 77478 TGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCT 77537 |||| | | ||| |||||| | | |||||| | || || || || || || | | Sbjct 1761591 TGATGTCCTGAGCCTTAGCTTGCTCGATGGCTTTGCAGGCTGCATGAATCTCCGCCCTTT 1761532 Query 77538 GGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAAT 77597 ||||||| |||||||| ||||| | | ||||| | || || ||||| | Sbjct 1761531 GGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCCAGT 1761472 Query 77598 ATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGT 77657 | |||| || | || || || | | ||||| |||| ||||||||||||| Sbjct 1761471 ACACGCTGATTCTTGCGCGAGCCCTCTCGCGCCCGTTACTGGAGCAGCAGCCGTCAGTGT 1761412 Query 77658 AGACCACCACGGCGTCACCCATGTA 77682 |||| ||||| | ||| |||||||| Sbjct 1761411 AGACAACCACAGAGTCCCCCATGTA 1761387 >seq11 Length=102031526 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || || ||||| ||||| || |||||||| Sbjct 79383451 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCGTTGTTTCTATGGCTTCCAAATTGC 79383393 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 79383392 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 79383335 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 79381780 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 79381721 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 79381720 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 79381665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| ||||||||||||||||| |||| || || || ||||| ||| Sbjct 79380148 GTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTT 79380089 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || | || || || |||||| ||||||| || ||| Sbjct 79380088 GAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 79380050 >seq19 Length=68041221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 49481826 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 49481767 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 49481766 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 49481707 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 49481706 GATGGCGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 49481665 >seq14 Length=93702490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 72005477 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 72005536 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 72005537 AACGAGTTTCAGAGTATCAGCG 72005558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397022472135490