Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq542 84.2 2e-11 >seq542 Length=2881201 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || ||||||||||| || |||| | || || |||| ||| ||| Sbjct 35932 GTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTCTTTGCCG 35991 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 | | | || |||||||| || || || || | ||||| | || ||| ||| ||| Sbjct 35992 GAGAAGATCAGACGCTGCTGGTCTGGTGGAATGCCCTCCTCGTCTTGGAT-TTGGCTTTG 36050 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| ||||| || || || || | |||||| |||| || Sbjct 36051 ACACTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTAATGGTCTTGCCCATCAGGGTC 36110 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||||||||| ||||| |||| Sbjct 36111 TTCACAAAGATCTGCATCTCTGC 36133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424470899881776