Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11 84.2 2e-11 >seq11 Length=102031526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-C 60037 ||||| | |||| ||||| ||| |||||||| |||||||| || || || || || | | Sbjct 79381776 AACGTGTGGTAGCCTTTGC-TGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTT-TGCGTC 79381719 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||| ||||||||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 79381718 TATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 79381659 Query 60098 TTCCCGGGACGAGG 60111 | | | ||||||| Sbjct 79381658 TAGCAGAGACGAGG 79381645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547911151593120