Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 6e-14 >seq10 Length=107483571 Score = 93.3 bits (102), Expect = 6e-14 Identities = 193/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Minus Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| || | ||||| || ||||||||||| ||||| ||||||||| | ||| | || | Sbjct 50655830 TGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTC 50655773 Query 14328 G--GGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 ||| ||| || || ||| ||| |||||| ||| ||| |||||| |||| Sbjct 50655772 CATGGATGCCTGGCTCTATTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCA 50655713 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 | |||| | ||||||||||| | ||||||| ||| ||| | ||||| | || Sbjct 50655712 TCGCCAGGCTGGTCAAGTGGCAGGGCCACGAGGGAGATGTCAGCATGGGGGCACCTTATG 50655653 Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGT 14505 | || ||| || ||||| | ||||||||||| | ||| |||| ||| || | | Sbjct 50655652 CACCCTGCTCTGGAATCCATCAGCGGGCCATCTGCATTTATGGGGCCGGGGACCTGCACT 50655593 Query 14506 GG---CTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || || ||| || ||||| || || |||||||| ||| Sbjct 50655592 GGATTCTCCAGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 50655552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658002251988480