Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18 91.5 9e-14 >seq18 Length=67558079 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| | |||||| | ||| |||||| ||||||||||||||| || || | Sbjct 35524282 CGCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 35524341 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | ||||| ||||| || || ||||| || | | || ||||| || | Sbjct 35524342 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 35524401 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | ||| ||||| || |||||| |||| | ||||| || | ||| | Sbjct 35524402 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGA 35524461 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || | || || || || || ||| || ||||| ||||||||||| ||| Sbjct 35524462 CCTCAAGAGTGATGGTCTTCCCCCTTAGGGTCTTCACGAAAATCTGCATCTTG 35524514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314386306525034