Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq24 192 5e-44 >seq24 Length=62255461 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 34164142 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 34164201 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 34164202 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 34164261 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || ||||| || ||||| |||||||| ||||||||||| || Sbjct 34164262 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 34164302 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 34164302 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 34164243 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| ||| Sbjct 34164242 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 34164183 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||||||||| Sbjct 34164182 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 34164142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| | Sbjct 34161788 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 34161847 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| |||| ||| ||| ||| | | | |||| || ||||||||||| Sbjct 34161848 GAGACTTCTTGGATGGCTTGGGCTTCTCCAACAGAGCTGAAGGG-GATTTGGGCCCGGTT 34161906 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 34161907 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 34161941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || ||||||||||| || |||| | | Sbjct 34161941 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC-CCCTTCAGC 34161883 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| |||| |||||||| ||||||| || ||||| || || Sbjct 34161882 TCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 34161823 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| || || ||||| | ||| |||| Sbjct 34161822 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 34161788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447760917646560