Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq8 250 2e-61 seq1 183 3e-41 seq5 122 7e-23 seq24 113 4e-20 >seq8 Length=117296131 Score = 250 bits (276), Expect = 2e-61 Identities = 391/555 (70%), Gaps = 7/555 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || |||| || | || |||||||| || || || || || ||||| Sbjct 23960897 CTAAACTGCATCATCACTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTGCCC 23960838 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC----ATCTTCTTCCAC 2255 ||||| || || | |||||||| || |||| |||| |||||| |||| |||| Sbjct 23960837 TGGCCACCACTCAGGAATGAATTCAAGTATTTCCAAAGAATGACTATAATCT-CTTCAGA 23960779 Query 2256 TGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || ||||||||| | || |||||||| || ||||| ||||| || |||| || Sbjct 23960778 AGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAA 23960719 Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 | | ||||| || ||||||| ||| | |||||||||||| | || || || || || Sbjct 23960718 GAATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCC 23960659 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC 2435 | || ||||| ||| |||| |||||| | ||| | || | ||| ||| || || Sbjct 23960658 AAAGGGAGCTCATTTTCTTGCCAAAAGTTTGGATGATGCCTTAGAACTTACTGAAGATCC 23960599 Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||||| | | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 23960598 AGAATTAACAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGA 23960539 Query 2496 GAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 ||| ||||| | || | | | || ||| | |||||||| ||||| |||||| Sbjct 23960538 AGCCATGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAAGAATTTG 23960480 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | |||||||||||| || || ||||| |||| ||| | |||| || Sbjct 23960479 AAAGTGATGTGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATC 23960420 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||| | | || || || ||||| || |||| ||||||||||| |||||| Sbjct 23960419 CAGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 23960360 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 23960359 AAAAGAACAATTAAT 23960345 >seq1 Length=157394656 Score = 183 bits (202), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 51623927 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 51623986 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 51623987 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 51624046 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || || |||||||| || || ||||| ||| Sbjct 51624047 ATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTGGAAGAT 51624106 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 51624107 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 51624166 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 51624167 TGCCTCACTCTCTTTG 51624182 >seq5 Length=114008975 Score = 122 bits (134), Expect = 7e-23 Identities = 289/425 (68%), Gaps = 20/425 (5%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTT-CACTTCCCATTAAAAGCA- 2320 ||||||||| | || || ||||| || ||||| ||||| |||| ||| ||||| | Sbjct 38988921 AAACAGAATTTGGTGATAATGGGTAGGAAGACGTGGTTCAACACT--CCAG-AAAAGAAT 38988865 Query 2321 -GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379 | |||| || | ||||| ||| | |||||| |||| | || || || || || | Sbjct 38988864 CGATCTTTAAAAGAAAGAATTAATATAATTCTCAATAGAGAACTCAAGGAACCTCCCCAG 38988805 Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439 || ||||| ||| |||| |||||| | ||| | ||| | ||| |||| | ||||| | Sbjct 38988804 GGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCTTTAGAACTTATCGTGCAACCAGCA 38988745 Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499 |||| | | | | |||| | |||| ||| | || | || ||| | | |||| ||| Sbjct 38988744 TTAACAAATAAACTAGATATGGTTTGAATAGTAGGAAGCAGTTCTAT---TAAGGA-AGC 38988689 Query 2500 ATT--ACAAGATCTTGCAAAC--AGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 || ||||| | || | | |||| | ||| | ||| ||| ||||| ||||||| Sbjct 38988688 CTTGAACAAGC-CAGGCCATCTTAGAT--TATTTGTGGCAATAATTATGCAAGAATTTGA 38988632 Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615 | ||||| ||| || | ||||| | || | || || |||| || | |||| ||| Sbjct 38988631 AAGTGATGCATTTTTTCTAGAAAATGATTTGGAAAATTATAAACTTCTCCCAGAATATCC 38988572 Query 2616 AGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGa 2675 ||||||||| ||| | || || || || | |||| ||||||||||| || | || Sbjct 38988571 AGGTGTTCCTTCT---ATCCAGGAGGAGAAAGTCATTAAGTACAAATTTGAAGTAAAAGA 38988515 Query 2676 aaaaa 2680 ||||| Sbjct 38988514 AAAAA 38988510 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || ||||| ||||||| |||| ||| | |||| | || | | Sbjct 48488015 TTTGGATAGTGGGAGGAAGTTCTGTCTGCAAGGAAGCCATAAACAAGC-CAGGCCATCTT 48487957 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| |||| || ||||| ||||||||| || ||||||||| Sbjct 48487956 AGACTATTTGTGACAAGGATCATGCAGGAACTTGAAAGTGATACATTTTTTCCAGAAATT 48487897 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || | || || |||| || | |||| |||||||||||| |||| || || || Sbjct 48487896 GATTTGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAT 48487837 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| ||||||||| || | |||| Sbjct 48487836 GAAAAAGGCATTAAGTACAAATTTGAAGCATATGAAAAGAACAATTAAT 48487788 >seq24 Length=62255461 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 61679830 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 61679771 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 61679770 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 61679711 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 61679710 ATCGCCCTGTGGATGACCGA 61679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414024706580872