Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 1e-12 >seq24 Length=62255461 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| ||||| || || ||||| |||| || Sbjct 34161951 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC 34161892 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || | |||| ||||||| ||||| ||||||| ||| |||||||| || Sbjct 34161891 CCCTTCAGCTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 34161832 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| || || || ||||| || || || || | ||| ||||| || Sbjct 34161831 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 34161784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369104157481238