Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20aegagrus_20[genbank_20GCA_5F000978405.1_202015-04-24] 89,498 sequences; 2,828,873,048 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 132 7e-26 seq2 120 4e-22 seq30 102 1e-16 seq11 91.5 2e-13 >seq15 Length=79227551 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 47744673 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 47744732 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 47744733 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 47744792 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 47744793 TTTCTTATACCAT 47744805 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || | Sbjct 47769326 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACTGCAATCCTTGCTGCCA 47769385 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||||||||| || | ||||| | || || ||| | || || || ||| ||| Sbjct 47769386 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 47769445 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | | || | ||| ||||||||| | |||| ||||| || |||||||||| ||| Sbjct 47769446 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 47769500 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 47765066 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 47765125 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 47765126 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 47765185 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 47765186 ATGTGTTGTGGTCTTTCAGCC 47765206 >seq2 Length=128023632 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 15/354 (4%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | | |||||||| |||||| | ||| ||||||| Sbjct 111181809 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 111181868 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 || || ||| |||| |||| | | || || || || ||| ||||||| | || | Sbjct 111181869 TGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 111181928 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| | || | || |||| | |||||||||||||| Sbjct 111181929 TTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACCAACATTTCCTCTATAATCTTC 111181988 Query 46056 ATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || |||| ||||| || |||| | || ||||| | |||||| Sbjct 111181989 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 111182048 Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168 | ||||||||| ||||| || | | ||| |||| || ||||| | ||| | Sbjct 111182049 CACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAAGC 111182103 Query 46169 TCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220 ||||||||| || || | || || || || |||||||| | ||||| || Sbjct 111182104 -ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCC 111182156 >seq30 Length=123478542 Score = 102 bits (112), Expect = 1e-16 Identities = 244/362 (67%), Gaps = 19/362 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| ||||| Sbjct 116980638 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTGAACTTCG 116980581 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || || | || |||| ||||||| | || Sbjct 116980580 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTATGCAATTCGATCACCCTTTTTG 116980521 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 116980520 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 116980461 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || || | ||||| || |||| | || | || | |||| Sbjct 116980460 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGCTGCCAAGCTAGCACGAGGA 116980401 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || ||||||||| ||||| || | | ||| |||| || ||||| | ||| Sbjct 116980400 GCCGCTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 116980346 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 | ||||||||| || || | || || || || |||||||| | || || || || Sbjct 116980345 GC-ACTTTCTCCATTGGTGGTACTGTGTAATCATAGGCACTGTACAGCTCGTAGCCCGCG 116980287 Query 46225 GC 46226 || Sbjct 116980286 GC 116980285 >seq11 Length=102031526 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 79380048 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 79380107 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 79380108 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 79380142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693891656646720