Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8 497 8e-136 seq5 297 1e-75 seq23 168 5e-37 seq22391 150 1e-31 seq7 123 2e-23 >seq8 Length=112672867 Score = 497 bits (550), Expect = 8e-136 Identities = 442/553 (80%), Gaps = 0/553 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 25016340 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 25016399 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 || |||||| |||||||||| | |||||| ||||| || | ||||| |||||| | Sbjct 25016400 CCAAAGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 25016459 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| |||| |||||| |||||||||||||| |||||||| ||| |||||| || || Sbjct 25016460 AAAACACATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTAAGATGGCCTG 25016519 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | |||| ||||| ||||| |||||||| ||||| | |||||| ||||||||||||| Sbjct 25016520 GCTTGTTCATGGCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTT 25016579 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 |||||| ||||||||| | ||| ||||||| ||| |||||||| ||||| || || | || Sbjct 25016580 TATTTGTTAATTCTGGATCTTCAGTAAGTTCTAAGGCATCATCCAAACTTTTGGCAAGAA 25016639 Query 4268 AATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTT 4327 ||||||||| | |||| | ||||| ||||| | |||||||| | |||||||||| | | Sbjct 25016640 AATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCT 25016699 Query 4328 TTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAAT 4387 ||||| | || |||||||| ||||| |||||||| ||||| ||||||||||||| |||| Sbjct 25016700 TTAAATGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 25016759 Query 4388 TCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCA 4447 |||||||| || | | ||||| | |||||||||||||||||| || || |||||| Sbjct 25016760 TCTGTTTACCTTCTTCTGAAGAGATTATAGTCATTCTTTGGAAATACTTGAATTCATTCC 25016819 Query 4448 TAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAA 4507 | ||| |||||| |||| ||| || | ||||| ||||||||||| || | |||| | Sbjct 25016820 TGAGTGGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACACAGTGA 25016879 Query 4508 CAATGCAGTTTAG 4520 ||||||||||| Sbjct 25016880 TGATGCAGTTTAG 25016892 >seq5 Length=119020588 Score = 297 bits (328), Expect = 1e-75 Identities = 325/431 (75%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || | ||||||||||||||||||||| |||||| || || | ||||| ||||| Sbjct 39193860 TTTTCTTTTACTTCAAATTTGTACTTAATGACTTTCTCCTCCTGGA---TAGAAGGAACA 39193916 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | |||||||||| | |||||| || || || | |||| |||| ||||||| | ||| Sbjct 39193917 CCTGGATATTCTGGGAGAAGTTTATAATTTTCCAAATCATTTTCTAGAAAAAATGCATCA 39193976 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| |||||||| || | | |||||| | | |||||| || ||| | ||| Sbjct 39193977 CTTTCAAATTCTTGCATAATTATTGCCACAAATAATCTAAGATGGCCTGGCTTGTTCAAG 39194036 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 ||||| ||| | |||||| | ||| | ||| || ||||| |||| |||||||| |||| Sbjct 39194037 GCTTCCTTA---ATAGAACTGCTTCCTACTATTCAAACCATATCTAGTTTATTTGTTAAT 39194093 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || || |||||| |||||||||||| | ||| || || | ||||||||||| Sbjct 39194094 GCTGGTTGCACGATAAGTTCTAAAGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 39194153 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 || ||| | ||||| ||||| | |||||| | ||||||||| ||||||||| || Sbjct 39194154 TGGGGAGGTTCCTTGAGTTCTCTATTGAGAATTATATTAATTCTTTCTTTTAAAGATCGA 39194213 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||||| || ||| | |||||| ||||| ||||||| ||||| ||||||||||||||| Sbjct 39194214 TTCTTTTCTGGAGTGTTGAACCACGTCTTCCTACCCATTATCACCAAATTCTGTTTATCT 39194273 Query 4399 GGTACAGAAGA 4409 ||| || || Sbjct 39194274 TCTACTGACGA 39194284 Score = 219 bits (242), Expect = 3e-52 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||| ||||||||||||||||| | | ||| || || || |||| Sbjct 47527623 ATTAATTGTTCTTTTCATATGCTTCAAATTTGTACTTAGTGCCTTTTTCGTCCTGGACAT 47527682 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| || || || | ||||| |||||||| Sbjct 47527683 CAGAAGGAACACCTGGATATTCTGGGAGAAGTTTATACTTTTCCAAATCAATTTCTGGAA 47527742 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || |||| ||||| || ||||||||||| |||||||| ||| |||||| || || Sbjct 47527743 AAAATGTATCACTTTCAAGTTCCTGCATGATCCTTGTCACAAATAGTCTAAGATGGCTTG 47527802 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || ||||| || | |||||||| ||||| | |||||| ||||||||||||| Sbjct 47527803 GCTTGTTTATGGCTTCCTTGCAGACAGAACTTCCTCCCACTATCCAAACCATGTCTACTT 47527862 Query 4208 TATT 4211 |||| Sbjct 47527863 TATT 47527866 >seq23 Length=48866549 Score = 168 bits (186), Expect = 5e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | ||| Sbjct 24548222 AGAAAGCTCTTAAGCCACATGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 24548281 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | ||| | | | || | || || Sbjct 24548282 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCAG 24548341 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 24548342 GATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 24548401 Query 27107 ACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTC 27166 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | || || Sbjct 24548402 ACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTC 24548461 Query 27167 ATTGCG 27172 |||||| Sbjct 24548462 ATTGCG 24548467 >seq22391 Length=17222 Score = 150 bits (166), Expect = 1e-31 Identities = 184/247 (74%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCT-ACAGTCA 26985 ||| |||| ||| | |||| | | |||||||| || || || |||||||| || | || Sbjct 1266 AGAAAGCTCTTAAGC-ACAT-GCGGACAATGGGGGTGACACAGGTGCAGCCCCACGGCCA 1209 Query 26986 CTAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTA 27045 | ||||||||||| |||| || || | ||||||| | ||| | | | || | || | Sbjct 1208 CCAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCTGAGACTCCCTTCGAAGGACCA 1149 Query 27046 GAATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAA 27105 | |||||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 1148 GGATCTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGA 1089 Query 27106 CACATCCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTT 27165 ||| ||| ||| || ||||| || ||||| ||||||||||| || || || | | | Sbjct 1088 TACAGCCTGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGTCCCT 1029 Query 27166 CATTGCG 27172 ||||||| Sbjct 1028 CATTGCG 1022 >seq7 Length=108433636 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 29823457 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 29823398 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 29823397 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 29823338 Query 4285 AGCTCC 4290 | ||| Sbjct 29823337 GGTTCC 29823332 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 29819287 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 29819228 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 29819227 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 29819179 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||| ||||| |||| |||||| |||||||| Sbjct 29825836 AAGTTTATATTTTTCAAAATCAATTTCTGGGAAAAACACATCACTTTCAAATTCTTGCAT 29825777 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| |||||| || ||| | |||| ||||| || | | ||| Sbjct 29825776 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGTTCATGGCTTCCTTTGAAATAGA 29825717 Query 4176 AC 4177 || Sbjct 29825716 AC 29825715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||||||||||||| | ||| || || || |||| Sbjct 29829649 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGACAT 29829590 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||| |||||| ||||||| Sbjct 29829589 CCGAAGGAACACCTGGATAT 29829570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361119526985657