Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq19 86.0 5e-12 seq11 82.4 7e-11 >seq19 Length=62516450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/247 (68%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 28924 CACAGCAACCGTTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACAT 28983 ||||| ||| || | |||| | | |||| || ||||||||||| ||| | || || Sbjct 32929070 CACAGTAACGTTTTCCTTTTAAACCTTATAG-GTCAAAATGCAAATCTTCGTGAAGACCC 32929012 Query 28984 TGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGC 29043 |||| ||||| ||||| ||| || ||| ||| || || | | || | ||| Sbjct 32929011 TGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTGAAGG 32928952 Query 29044 AAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCA 29103 || || ||||| ||||| | ||| || || || || || |||||||| |||| Sbjct 32928951 CCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCA 32928892 Query 29104 AACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 | || ||||||||| | ||| | | |||||||| || |||||||| || || || | Sbjct 32928891 AGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAGGAGTCGACCCTGC 32928832 Query 29164 ACATGGT 29170 || |||| Sbjct 32928831 ACCTGGT 32928825 >seq11 Length=106225002 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||||| || || || |||||||| ||| |||| ||||||||||||||| Sbjct 47457474 GATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAA 47457415 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 || | | || || || | ||||| ||||| ||||| || |||||||| Sbjct 47457414 GA-TGGATGTCTTTGACCAACTACAACATTCAAAAGGAGTCCACTCTTCA 47457366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428179875142085