Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq22 277 2e-69 seq9 118 1e-21 seq12 87.8 2e-12 >seq22 Length=60283066 Score = 277 bits (306), Expect = 2e-69 Identities = 264/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| || ||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 50829626 AGCAGGGTTTCAATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 50829567 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 50829566 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 50829507 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||| | |||| || |||||| ||| ||| | | |||||| || Sbjct 50829506 CACACCGGGGACCACGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTT 50829447 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| | ||| || |||||||||||||||||||| ||| | | || |||||| Sbjct 50829446 GGCGTGGGCAGAGTCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTGACC 50829387 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||| ||||||||||| || || |||||||| || || || ||||||| |||| Sbjct 50829386 TCGCACTTTTCGAAGAGCATGAAATTGGGCTCGAACCCACCGCCTGGTCGGACGTACTTC 50829327 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| ||| |||||||| Sbjct 50829326 AGGCAATTCAGGATCTCCTCGTTCTTGGCATTTTCCTG 50829289 Score = 150 bits (166), Expect = 2e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || || || ||||| ||||| | ||| |||| Sbjct 50829031 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGTACCACCAGGCCCCGGGGTCCGAGGC 50828972 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 50828971 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 50828912 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | || || || || | Sbjct 50828911 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGTTGGAAGGGCTCCCCACCCG 50828852 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | || || || |||||||||||||| Sbjct 50828851 CCAGAGGACGCGCGGAGAAGGCGTACAC 50828824 >seq9 Length=91568626 Score = 118 bits (130), Expect = 1e-21 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 30244368 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 30244426 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 30244427 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 30244486 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| |||||| Sbjct 30244487 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAT 30244545 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 30244546 GTGCAGCTGCTCTACCCACGGGCTAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 30244604 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || |||||||||||||||||||| | |||||| || |||||| Sbjct 30244605 CAAACTCGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 30244650 >seq12 Length=87277232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| |||| || | |||||||| | | ||||| | | |||| ||||||||| Sbjct 70101963 GGGGAAGCGGGGCTTCTGTATCGGGCTCAATGTCCAGGATTAGAAAGCGACGGCTGTACC 70101904 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT-CTCGAAGTTCCAGGCCACGTCG 83170 |||||| |||| ||||| | ||||||| || ||| || |||| || ||| | ||| Sbjct 70101903 TGCGCAAGGGCCCACCGTCTGGGCCCACCAGGAGCTTCCTGGAAGCTCTGGGCGAAGTCC 70101844 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 |||||||||| || |||||| |||| | ||| || || |||| Sbjct 70101843 CTGCGGCACAC-AGACACCAGGGGATGAACCTGGGATCCTTCCCGAG 70101798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608569208926280