Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq11 82.4 6e-11 >seq11 Length=106225002 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/110 (77%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||||| || || || |||||||| ||| |||| ||||||||| ||||| Sbjct 47457474 GATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTTGCTGGCAAACAACTGGAA 47457415 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | || || || | ||||| ||||||||||| || |||||||| Sbjct 47457414 GATGG-ATGTCTTTGACCAACTACAACATTCAAAAGGAGTCCACTCTTCA 47457366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410647068032498