Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 seq18 89.7 4e-13 seq2 87.8 2e-12 seq3 82.4 7e-11 >seq19 Length=62516450 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 32928141 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 32928200 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| ||||||| | |||||| || || || ||||| ||||| || Sbjct 32928201 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32928260 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32928261 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 32928320 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 32928321 CCGGTCAGGGTCTTCACGAAGATCTGCAT 32928349 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 32928597 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 32928656 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 32928657 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32928716 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32928717 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 32928776 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 32928777 CCGGTCAGGGTCTTCACGAAGATCTGCAT 32928805 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || || |||||||| | |||||| ||| || Sbjct 32928369 ACCAGGTGCAGGGTCGACTCCTTCTGGATATTGTAATCAGAAAGAGTGCGACCATCTTCC 32928428 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 32928429 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32928488 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32928489 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 32928548 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 32928549 CCGGTCAGGGTCTTCACGAAGATCTGCAT 32928577 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || ||||||||||| | |||||| ||| || Sbjct 32928825 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 32928884 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 32928885 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 32928944 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 32928945 ATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 32929004 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 32929005 CCGGTCAGGGTCTTCACGAAGATTTGCAT 32929033 >seq18 Length=67275902 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | ||||||||| | || | || ||||| |||||||||||||| || | Sbjct 38083876 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 38083935 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || || || || ||||| |||| || | ||||| || ||||| Sbjct 38083936 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 38083995 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| || || || || || | ||| | || |||| | ||||||| Sbjct 38083996 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 38084055 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || || || || || || ||||||||||| Sbjct 38084056 TCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 38084102 >seq2 Length=136510947 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || ||| |||||| | || ||| | || ||| |||| || || || || ||||||||||| Sbjct 39540322 ATTCTCCAGCTGTGTGCCTGCGAAAATCAGATGCTGTTGGTCAGGCGGGATGCCCTCCTT 39540381 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||||| ||| || | || |||||| || ||||||||| | ||| | Sbjct 39540382 GTCTCGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAAT 39540441 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||| || || ||||| |||||||| Sbjct 39540442 GGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 39540477 >seq3 Length=120038259 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| || || | || ||||| |||||||||||||| || || || | Sbjct 100093967 TCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCATGTCC 100094026 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | || || ||||| |||| || | ||||| || ||||| || || ||||| Sbjct 100094027 ATCTTCCACGTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 100094086 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || | || | ||| | || |||| | |||||||| || || | Sbjct 100094087 ATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCGACCTTGAGAGTGAT 100094146 Query 118703 CGTTTTGCCGGTCA-GAGTTTTTACAAAAATCTGCAT 118738 || || || |||| |||| || |||||||||||||| Sbjct 100094147 GGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCAT 100094183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433672272479644