Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq19 109 6e-19 seq23 100 3e-16 seq26050 98.7 1e-15 seq24195 98.7 1e-15 seq17 98.7 1e-15 seq5 98.7 1e-15 seq3 98.7 1e-15 seq22 95.1 1e-14 seq15 95.1 1e-14 seq27202 91.5 2e-13 seq4 87.8 2e-12 seq2 86.0 7e-12 >seq19 Length=62516450 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || |||||||| || || || Sbjct 32928842 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32928901 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || ||||| ||| ||| || || | | Sbjct 32928902 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 32928961 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 32928962 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32929021 Query 43172 AAAGATTTGCATTTTTAC 43189 |||||||||||||| || Sbjct 32929022 GAAGATTTGCATTTTGAC 32929039 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27583382 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27583441 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 27583442 TACTAACGAGGAGTGA 27583457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||||| ||||| || | || || |||||||| || || || Sbjct 32928386 CTCCTTCTGGATATTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 32928445 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || ||||| ||| ||| || || | | Sbjct 32928446 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 32928505 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 32928506 CTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32928565 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 32928566 GAAGATCTGCAT 32928577 >seq23 Length=48866549 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 18858658 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 18858717 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 18858718 ATACTAACGAGGA 18858730 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 18804692 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 18804633 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 18804632 TACTAACGAGGA 18804621 >seq26050 Length=23906 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8735 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8794 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8795 TACTAACGAGGA 8806 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11727 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11668 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11667 TACTAACGAGGA 11656 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 20236 CTCCCCGTCGGGGAATCGAACCCCGGTCTCC-GCGTGACAGGCGGGGATACTCACCACTA 20178 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 20177 TACTAACGAGGA 20166 >seq24195 Length=24981 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15916 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15975 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 15976 TACTAACGAGGA 15987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24288 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24347 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 24348 TACTAACGAGGA 24359 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 7631 CTCCCCGTCGGGGAATCGAACCCCGGTCTCC-GCGTGACAGGCGGGGATACTCACCACTA 7689 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7690 TACTAACGAGGA 7701 >seq17 Length=71137785 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 20323913 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20323972 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 20323973 TACTAACGAGGA 20323984 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 20326794 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20326853 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 20326854 TACTAACGAGGA 20326865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||| |||| ||| ||| || || || ||||| |||| | Sbjct 20311835 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 20311894 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || ||||| || || || || || | | ||||||||| | || Sbjct 20311895 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 20311954 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || || || ||| || |||| || | | ||||| || | ||||| Sbjct 20311955 ATGCCTTCTTTTTCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 20312014 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || |||||||||||||| |||||| Sbjct 20312015 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 20312062 >seq5 Length=119020588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 59020900 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 59020841 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 59020840 TACTAACGAGGA 59020829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 61392771 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 61392712 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 61392711 TACTAACGAGGA 61392700 >seq3 Length=120038259 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 112020517 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 112020576 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 112020577 TACTAACGAGGA 112020588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 112030257 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 112030198 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 112030197 TACTAACGAGGA 112030186 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 112038761 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 112038702 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 112038701 TACTAACGAGGA 112038690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 112112768 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 112112709 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 112112708 TACTAACGAGGA 112112697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| | |||||||||||||||||||||||| | ||||||| || ||||||||| Sbjct 43706420 TTGTCTCCCCATCAGGGAATCGAACCCTGGTCTCCCACCTGACAGGTGGGGATACTCACC 43706361 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| ||||| Sbjct 43706360 ACTATACTAAAGAGGA 43706345 >seq22 Length=60283066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 6633100 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 6633041 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 6633040 TACAAACGAGGA 6633029 >seq15 Length=81904557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 76028074 CTCCCTGTCAGGGAAACGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 76028015 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 76028014 TACTAACGAGGA 76028003 >seq27202 Length=13035 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/72 (90%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8002 CTCCCCGTC-GGGAATCGAACCC-GGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7945 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7944 TACTAACGAGGA 7933 >seq4 Length=120734966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||| |||||| ||||||||||||||||||||||| ||||||| |||||||||| |||| Sbjct 87392784 GGGACTCGAACACTGGTCTCCCGCGTGACAGGCGGGGATACTCAGCACTATACTAACGAG 87392843 Query 60136 GAT 60138 ||| Sbjct 87392844 GAT 87392846 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||| |||||||||||| ||||||||||||| Sbjct 31705703 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCACGTGACAGGCGGGGATACTCACCACTA 31705762 Query 60126 TACT 60129 |||| Sbjct 31705763 TACT 31705766 >seq2 Length=136510947 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || ||||||| |||||||||||||| | |||||||||||| ||||||||||||| Sbjct 131929766 CTCCCCGTTAGGGAATTGAACCCTGGTCTCCTGTGTGACAGGCGGAGATACTCACCACTA 131929707 Query 60126 TACTACCGAG 60135 |||| |||| Sbjct 131929706 CACTAACGAG 131929697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571603833137960