Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 4e-13 >seq24 Length=62310066 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | || ||||| || || ||||| || ||||| | || Sbjct 35898475 AGATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAA 35898534 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| ||||| || | || ||||| |||||||| || || Sbjct 35898535 TGGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTT 35898594 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||||||||| || || || ||||| || || ||||| ||||| Sbjct 35898595 CAATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 35898636 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 20285 CAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGA 20344 || |||||| || ||||||||||||||| | ||||| || ||| | ||| ||||| | Sbjct 35897657 CAGATTATTCAGGTCAAGGAGTAGATCAACTGCAAAAAGTGATTGACACAATCAAAACCA 35897716 Query 20345 ACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 |||| |||||||||||||| || | || || ||||| | |||| Sbjct 35897717 ACCCTAACGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAG 35897761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399038500800115