Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19 86.0 5e-12 seq18 86.0 5e-12 seq11 84.2 2e-11 seq26 82.4 6e-11 >seq19 Length=62516450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || |||||||| || | | || | |||| Sbjct 32928822 AGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 32928881 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 32928882 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 32928941 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | ||||||| |||||| || | ||||||| | Sbjct 32928942 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 32929001 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || ||||||||||| Sbjct 32929002 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 32929036 >seq18 Length=67275902 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| | || | ||||| || || || ||||||||||||||||| | | Sbjct 38083876 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 38083935 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| ||| ||||| ||| |||| |||||||| || || || Sbjct 38083936 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 38083995 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| || | ||| || | | | | || || ||||||| Sbjct 38083996 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 38084055 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| |||||| | || || || | || || || ||||| ||||| || Sbjct 38084056 TCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 38084105 >seq11 Length=106225002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || || | ||||| || || || |||||||||||||||| || Sbjct 47457341 TCCACCACGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGT 47457400 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || | | || ||||||| ||||||||| ||| ||| |||||||| || || || Sbjct 47457401 CAAAGACATCCA-TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGG 47457459 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 || ||||||||||| || | ||| || | | | | || || ||||| | Sbjct 47457460 AACACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGAC 47457519 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | | |||||| || || ||||| || || || ||||| ||||| Sbjct 47457520 CTTGAGAGAGATGCTCTTCCCTGTCAAGGTCTTCACGAAAATCTGCAT 47457567 >seq26 Length=51421553 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/157 (72%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTA--TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| ||| || || ||||| | || | ||||| || || | Sbjct 9312765 AAGACTTCTTCCTTTTCTTAGTTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACT 9312824 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| || ||| Sbjct 9312825 CCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGA 9312884 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| || || || | ||||||||||| Sbjct 9312885 TCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 9312921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379205732312715