Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 seq11 95.1 1e-14 seq18 91.5 1e-13 seq26 84.2 2e-11 >seq15 Length=81904557 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 32342743 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 32342684 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 32342683 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 32342624 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 32342623 CCTGTCTCTGTCTGAGACTCAATGATGGC 32342595 >seq11 Length=106225002 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||||| || | ||| | || | || | || | Sbjct 47457567 ATGCAGATTTTCGTGAAGACCTTGACAGGGAAGAGCATCTCTCTCAAGGTCAAGCCCTTG 47457508 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || ||| |||||||| || || || |||||| Sbjct 47457507 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTGTTCCTCCTGACCAG 47457448 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || | ||||||||||| ||||||| | ||| || ||| | | || ||| Sbjct 47457447 CAAAGACTGATCGTTGCTGGCAAACAACTGGAAGA-TGGATGTCTTTGACCAACTACAAC 47457389 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGAC 31409 |||||||| || || ||||||||||| || || |||| Sbjct 47457388 ATTCAAAAGGAGTCCACTCTTCATCTTGTGCTGAGAC 47457352 >seq18 Length=67275902 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || ||||| | || || || || Sbjct 38084105 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCGAGCCC 38084046 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 38084045 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 38083986 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 38083985 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 38083927 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 38083926 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 38083885 >seq26 Length=51421553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||| | ||||| |||||||| || || | ||| | || || || || || | Sbjct 9313013 TGCAGATTTTCATGAAGACCCTGACAGGGAAGACCACCACTCTTGAGGTCGAGCCCTCGG 9312954 Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313 | | |||| || || | || ||| |||||||| | || || ||||||| Sbjct 9312953 ATACAACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 9312894 Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAAC 31372 | | || || || | |||||| || ||||||| | ||| ||| || || || ||| Sbjct 9312893 AAAGACTGATCTTTGTTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTACAAC 9312835 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || ||||||||||| || | ||||| Sbjct 9312834 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 9312797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445599755803440