Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29 178 2e-39 seq15 134 2e-26 seq11 123 3e-23 seq14 98.7 1e-15 seq5 98.7 1e-15 seq2 91.5 2e-13 >seq29 Length=51332696 Score = 178 bits (196), Expect = 2e-39 Identities = 206/278 (74%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || ||||||| | |||||||| |||||||||| |||||||| || | Sbjct 21487783 GGATCTTTTGGTCTGATTTTAGACATGACTTTAAACAGACATAAGCATCCCCTTAACCCA 21487724 Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497 ||||| |||| || ||||| |||||| ||| | || || |||||| ||||||||||| Sbjct 21487723 TACCTGCTTTTTGTATTTATACTGTTGGAAGCGCTGACTGTGGCCTTCATTGTTACTTTC 21487664 Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557 | ||||| ||| || | |||| ||| || |||| |||||| |||| || | Sbjct 21487663 TGTGATGTAGATATTGTCCTGCAAGATTTTATACTGACCCATGCAGTATTTCCTGATTCA 21487604 Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617 ||| | |||||| ||||| |||||||||| | | ||| ||| | |||| | ||| || Sbjct 21487603 ACTGTGTATACTCTGCAATCTAAGAGAGATTGCGGCAAATTTGGAGCAGGCCTATTTTCT 21487544 Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655 | ||| |||||||| | ||||||||| |||||| ||| Sbjct 21487543 GGTTTGTGGATTTTGTTCTTGTCAGGAATCTTGAAGAT 21487506 >seq15 Length=81904557 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 32351242 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 32351183 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 32351182 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 32351123 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 32351122 CTGTTTCTTATACCATA 32351106 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || || | ||| || || || || || || | Sbjct 32345919 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 32345860 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | || || || || || ||||| || | Sbjct 32345859 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 32345800 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 32345799 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 32345740 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 32345739 GTTTATTCGA 32345730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| |||| ||| || ||||| ||||| | || || | || || || || || || | Sbjct 32326716 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACTGCAATCCTTGCTGCCAGGA 32326657 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 32326656 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 32326597 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 32326596 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 32326551 >seq11 Length=106225002 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||||||||| || ||||| || || || || | Sbjct 87089798 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87089857 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 87089858 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87089917 Query 33724 C 33724 | Sbjct 87089918 C 87089918 Score = 111 bits (122), Expect = 2e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 87091488 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87091547 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | ||||||||||||||| |||||| Sbjct 87091548 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCT 87091593 >seq14 Length=94672733 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 20026065 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 20026124 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 20026125 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 20026183 >seq5 Length=119020588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||| |||||||||| | | | || | ||||||||||| ||||| |||||| ||| Sbjct 46988338 GTTACCTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 46988397 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 46988398 CTTGGTTTGACTGTATATACTTTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 46988456 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| Sbjct 46975909 TGCTCCTCCATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 46975968 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 46975969 ATCCGAATGG 46975978 >seq2 Length=136510947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 31338 ATCTAGAGATTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31397 ||||| | ||| ||||| || |||||| ||| |||| |||| | | || ||||| || Sbjct 16802342 ATCTAAAATTTGAACTTCCTCTGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 16802283 Query 31398 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31457 ||| ||| || | || || | |||| | ||| ||| ||||| | | || || Sbjct 16802282 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACC 16802223 Query 31458 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31514 | ||||| ||||||||||| ||||| ||||| |||||| ||| || | |||| Sbjct 16802222 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 16802163 Query 31515 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31550 | || ||||| | |||||| | ||| |||||||| Sbjct 16802162 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 16802127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629582150562960