Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq24 134 1e-26 seq8 91.5 1e-13 >seq24 Length=62310066 Score = 134 bits (148), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||| |||||| ||| ||||||| || || || |||||||||||||| || || || | Sbjct 35898650 TCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGG 35898591 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| ||||||| |||||||||||||||||| Sbjct 35898590 GCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCA 35898531 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 ||||||| ||||| || | |||| || || ||||| ||||| | | ||| || | || Sbjct 35898530 CCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGAGG 35898471 Query 21169 GG 21170 || Sbjct 35898470 GG 35898469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || ||||||||||| ||||||||||| || || ||||| |||| ||| || || Sbjct 35896277 TGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAG 35896218 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTT 21399 | || ||||||| | |||| ||| | |||||||||| || |||||||||| Sbjct 35896217 CTCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTT 35896158 Query 21400 TTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCC 21440 | || || | |||||||| | | || |||||| ||| Sbjct 35896157 TCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 35896117 >seq8 Length=112672867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 219/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTT-TGT 2948 || ||||||||| | ||||| | | ||| ||| ||| || || | | ||| || || Sbjct 25016536 CTTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGG 25016595 Query 2949 ATTGTCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 || || || | | || ||||| || | || | || ||||| || ||||| | | Sbjct 25016596 ATCTTCAGTA-AGTTCTAAGGCATCATCCAAACTTTTGGCAAGAAAATGAGCTCCCTTTG 25016654 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | | | || |||| Sbjct 25016655 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAATGTCGATTCT 25016714 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||||| || | | |||||||| |||| ||||| || |||| | Sbjct 25016715 TCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTT 25016774 Query 3129 CCGATG-GCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAA 3187 | || | | || | |||||| | || |||||| | | ||| || || || ||||| Sbjct 25016775 CTGAAGAGATTATA-GTCATTCTTTGGAAATACTTGAATTCATTCCTGAGTGGTGGCCAG 25016833 Query 3188 GGCATTGTTCCGTTTTTACCAATTCC 3213 |||| | ||||| || || || || Sbjct 25016834 GGCAGGTTCCCGTTCTTGCCGATGCC 25016859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427620079257360