Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq18 159 8e-34 seq26 138 3e-27 seq2 113 1e-19 seq14 111 4e-19 seq17 107 4e-18 seq11 100 7e-16 seq9 95.1 3e-14 >seq18 Length=67275902 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 38083894 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 38083953 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 38083954 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 38084013 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || ||||| Sbjct 38084014 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCTTC 38084073 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || |||||||| ||| Sbjct 38084074 CCCGTTAGGGTCTTCACGAAAATCTGCATCTTG 38084106 >seq26 Length=51421553 Score = 138 bits (152), Expect = 3e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| || |||| || | || || | |||||||| | || || || || ||||| || Sbjct 9312778 TTTCTTAGTTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTT 9312837 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||||| | ||| | || ||||| ||||| || ||| |||| || || || || || Sbjct 9312838 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 9312897 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 |||||||| |||||||| |||||||| ||||| || |||||||||||| ||||| Sbjct 9312898 GTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGA 9312957 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 || || ||||| || || | ||||| || || || || || | || ||||||| Sbjct 9312958 GGGCTCGACCTCAAGAGTGGTGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCA 9313013 >seq2 Length=136510947 Score = 113 bits (124), Expect = 1e-19 Identities = 243/362 (67%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 65635 TTACT-CCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACA 65693 ||||| ||||| |||||||| || | ||| || ||||| || ||||| | || | Sbjct 16802386 TTACTTCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAA--ATTT--- 16802332 Query 65694 GAAAGAGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTA 65753 || | ||| | ||||||| | ||| |||| | |||| || || | | | Sbjct 16802331 ----GAACTTCCTCTGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTTGA 16802276 Query 65754 TCGCCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTA 65813 || || || | | ||||| ||| || || |||||||| | | | |||||||| Sbjct 16802275 TCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACCAACATTT 16802216 Query 65814 CCTCTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAAT 65873 |||||||| ||| |||||| |||||||| ||||||||||| |||| || || || Sbjct 16802215 CCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAG 16802156 Query 65874 CCAGATCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTA 65933 ||||| || ||||| | ||| ||||| | || ||||| | ||| | ||||| Sbjct 16802155 CCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTT 16802096 Query 65934 AATACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATAT 65993 || | |||| ||||| ||| |||| || ||||| || || || || || ||||| Sbjct 16802095 TTCACAAGCACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAG 16802036 Query 65994 CC 65995 || Sbjct 16802035 CC 16802034 >seq14 Length=94672733 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 20026198 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCT 20026139 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 20026138 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTC 20026079 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 20026078 ATCAGCAGAGATGAAG 20026063 >seq17 Length=71137785 Score = 107 bits (118), Expect = 4e-18 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || || ||||| || |||||||| | ||| | |||| ||| Sbjct 30372905 AGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA----TCTTTCAGT 30372960 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || |||||||| || || || || || |||||||| |||||| ||| |||| | | Sbjct 30372961 TGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAGCTCCTTCCTTACCCTGGACC 30373020 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || | ||||||||||||| || ||| || || ||||| | || || ||||| || Sbjct 30373021 TTGACCTTTACATTTTCTATGGGATCTGAGGGCTCGACCTCAGGAGTGATGGTCTTCCCC 30373080 Query 104534 GTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || |||||||| ||| Sbjct 30373081 ATCAGGGTCTTCACGAAAATCTGCATCTTG 30373110 >seq11 Length=106225002 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| | || || || || ||||| || |||| | | || | || Sbjct 47457354 CTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGTCAAAGACAT-CCA 47457412 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| |||||||| ||||||| || || || || || |||||||| | ||||| ||| Sbjct 47457413 TCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCCTTA 47457472 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| ||||| || ||||||||||||| ||||| || | |||| || | || Sbjct 47457473 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAGATG 47457532 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || | || || || || |||||||| Sbjct 47457533 CTCTTCCCTGTCAAGGTCTTCACGAAAATCTGCAT 47457567 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || |||||||| || || || || ||||| ||||| ||||||| | Sbjct 21255762 CCATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTT 21255703 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || ||||| || ||||||||||||| | ||| |||| || || | || Sbjct 21255702 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 21255643 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | ||| | || || || || | || |||||||| ||| Sbjct 21255642 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTTG 21255601 >seq9 Length=91568626 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 6919343 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 6919284 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || || |||||||| | ||| ||||| || ||| Sbjct 6919283 AAGAAAAACAACCAAGTCTCTTTCCTCCACGTGTATCATCACTGTACCATGTTCACGTTG 6919224 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| | ||||||||||| Sbjct 6919223 TGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 6919189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150957203203156