Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq19 100 3e-16 >seq19 Length=62516450 Score = 100 bits (110), Expect = 3e-16 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 |||||||| |||||| | ||||| || | ||| | || ||||| ||||| ||||| || Sbjct 45145059 TTAGGCTGCAAACATGTTAAAGGCATCCTGTTATACGGGCCTCCAGGTTGTGGTAAGACT 45145000 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAAT 164616 || |||||||| |||| |||| | || ||| | || || |||| | || ||| Sbjct 45144999 CTATTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAGCC--TAAAGTGGTCAAT 45144943 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || |||||||| ||||| || | || | ||| Sbjct 45144942 GGGCCGGAAATTCTCAACAAATATGTGGGAGAGTCAGAGGCTAACATTCGTAAACTCTTT 45144883 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 45144882 GCTGATGCTGAAGAGGAGCAAAGGA 45144858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595649240701200