Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16 165 1e-35 seq11 105 9e-18 >seq16 Length=79370172 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 66348522 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 66348581 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 66348582 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 66348641 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | ||| || | | || || |||||||| | Sbjct 66348642 ACCTCCTGGCCTACAGCAAACTTCAAGTGTTCAGGAATATGAGGTGGGTAGATCATTTCA 66348701 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 66348702 ACCTGAGTATCTTTGACAGTGGGAGGATACATCTCTCCATTAATCATCT 66348750 Score = 161 bits (178), Expect = 1e-34 Identities = 218/304 (72%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || | Sbjct 66346843 GAACACTGAATGAGGTAAAGGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 66346902 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 66346903 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 66346962 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | || || || || || |||| || ||||| ||||| || || || || || | Sbjct 66346963 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCGGCTTCTA 66347022 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| |||| || |||||||||| |||||||||||| || |||| | ||| |||| Sbjct 66347023 CCATGGTCTCCCCAAAGATGGCGTCGGGACGGGGCTTCTCTACCAGAAGGGCGGGATACA 66347082 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||| || || ||||||||||| || || | || ||||| |||||||| |||| Sbjct 66347083 GCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 66347142 Query 8973 CTGT 8976 |||| Sbjct 66347143 CTGT 66347146 Score = 105 bits (116), Expect = 9e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | | ||| ||| | || Sbjct 66349530 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAATATCTGTCTTGAA 66349589 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 66349590 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCAGATTTGTGCCCTGGGGATC 66349649 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGATT 10207 ||| |||| | || | ||||| ||||| |||||| | | || ||| || || | Sbjct 66349650 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTCGAATCAGGAAGCTC 66349709 Query 10208 TTT 10210 ||| Sbjct 66349710 TTT 66349712 >seq11 Length=106225002 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || ||||| | |||||||| | || || |||||| ||| Sbjct 92849421 AAGCCCACCTCACCACCAAATGTGCTCGCCTTCCAGTACTCTGGAGAACAGATGGGGTTT 92849362 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || ||||| || |||||||||| || | || ||||| || |||||| Sbjct 92849361 CCTAAGAGGCCCTTAAGGGAGAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 92849302 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| || |||| ||| ||||||||| Sbjct 92849301 GAGTTAGGATGGCACTTCTCAAGAAGTAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 92849242 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || ||||| || |||| Sbjct 92849241 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCACCTG 92849199 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || ||||| || ||||| | || |||||| | || || || ||| | ||| Sbjct 92836347 GTACTCACCCCGTGGCCCAGCGCCTTGGTGAAGCCAGGACCCATCTTGCCGGA--AGTTT 92836290 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 |||| ||||| || ||||| |||||| |||| ||||||||||| | ||||||||| || | Sbjct 92836289 TAAAGAACTGATGGGTGAAGTGTTGGGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGAG 92836230 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | ||||| |||| |||||| Sbjct 92836229 GGTCGGGGATGAACTTCCTCC 92836209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708259926860080