Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq14 96.9 4e-15 seq11 86.0 7e-12 >seq5 Length=119020588 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || |||||||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 118192865 TCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTCCCAGTGAAGTACAGGATGTCTGACTG 118192806 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||||||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 118192805 AATGTCCAATTTTTTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 118192746 Query 130776 CCCTTTGGGCAAGT 130789 || | |||||| || Sbjct 118192745 CCTTCTGGGCAGGT 118192732 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || ||| |||||| | | ||||| ||| ||| | |||||| |||| | Sbjct 98632472 AGCTCCTCCTCCATTTCAAACTGAGCAAGAACAGCTTCCATTTTAGTACAGGATGTCTGA 98632413 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||||| Sbjct 98632412 CTGAATGTCCAATTCTTTGATTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATC 98632353 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| | |||||| || ||||| Sbjct 98632352 CATCCTTCTGGGCAGGTGACATA 98632330 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130656 TCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCA 130715 || || ||| |||||| | | ||||| ||||||| ||||||||| |||| | | Sbjct 98936400 TCCTCCTCCATTTCAAACTGAGCAAGAACAGCTCCCACTGAAGTACAGGATGTCTGACTG 98936459 Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 ||||||||||||| ||| ||||||||||| ||||| || ||| |||||||||||||| Sbjct 98936460 AATGTCCAATTTTCTGAGTCTTCAGAAAAATAAAAACACTTACTCCCAAATCCAATCCAC 98936519 Query 130776 CCCTTTGGGCA 130786 || | |||||| Sbjct 98936520 CCTTCTGGGCA 98936530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | |||| ||| ||||||||||||| ||||| | | |||||||| Sbjct 98560182 GTTTCAAACTGAGCAAGGACAGCTTCCAATGAAGTACAGAATGTCTGACTGAATGTCCAG 98560123 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||| ||||||||||| ||||| |||||| ||||||||| |||||||| ||| | Sbjct 98560122 TTCCTTGTGTCTTCAGAAAAATAAAAACATTTACTTCCAAATCCTATCCATCCTTTTAAG 98560063 Query 130785 CAAGTAACAT 130794 || | |||| Sbjct 98560062 CAGGGGACAT 98560053 >seq14 Length=94672733 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 20015606 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 20015665 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 20015666 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 20015725 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 20015726 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 20015756 >seq11 Length=106225002 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 87088199 TTGACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 87088258 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 87088259 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 87088298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531701955534680