Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq11 129 7e-25 seq14 107 2e-18 seq2 91.5 2e-13 >seq15 Length=81904557 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 32351242 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATG 32351183 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 32351182 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 32351123 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 32351122 CTGTTTCTTATACCATA 32351106 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| |||| ||| || ||||| ||||| | || || || || || || || || || | Sbjct 32326716 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACTGCAATCCTTGCTGCCAGGA 32326657 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 32326656 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 32326597 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 32326596 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 32326551 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 32345919 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 32345860 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 32345859 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 32345800 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 32345799 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 32345740 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 32345739 GTTTATTCGA 32345730 >seq11 Length=106225002 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 87089798 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 87089857 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || || ||||||||||| ||||| ||||||||||||| Sbjct 87089858 TGAGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 87089917 Query 33446 C 33446 | Sbjct 87089918 C 87089918 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 87091488 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 87091547 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | ||||||||||||||| |||||| | ||| || || Sbjct 87091548 AATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 87091607 Query 33684 CGCC 33687 | || Sbjct 87091608 CACC 87091611 >seq14 Length=94672733 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 20026065 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 20026124 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 20026125 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 20026183 >seq2 Length=136510947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 31086 ATCTAGAGATTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGC 31145 ||||| | ||| ||||| || |||||| ||| |||| |||| | | || ||||| || Sbjct 16802342 ATCTAAAATTTGAACTTCCTCTGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 16802283 Query 31146 TATTCTATCTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCC 31205 ||| ||| || | || || | |||| | ||| ||| ||||| | | || || Sbjct 16802282 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACC 16802223 Query 31206 TATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAG 31262 | ||||| ||||||||||| ||||| ||||| |||||| ||| || | |||| Sbjct 16802222 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 16802163 Query 31263 GGACAGACCAGACCTAGGAGCTATTCTACCATAGCA 31298 | || ||||| | |||||| | ||| |||||||| Sbjct 16802162 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCA 16802127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622714318976120