Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq17 87.8 2e-12 >seq17 Length=71137785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 26753 TTTTTAGTCAAACAAA--ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACC 26810 ||||| || |||| | ||||| | |||||||| || | ||||| ||| | ||||| Sbjct 20312079 TTTTTGTTCCAACAGACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACT 20312020 Query 26811 ATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAA 26870 | || | || | | |||||||||||| | ||||| ||||| || |||||| Sbjct 20312019 CTGGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGTGAAGATCCAAGAAAAAGAA 20311960 Query 26871 GGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 26930 || || || || || || || || | || | | ||| ||||| || ||||||| | Sbjct 20311959 GGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGC 20311900 Query 26931 AACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGA 26990 | | | ||||| ||||| || ||||| || ||| | || |||||||| | || ||| Sbjct 20311899 ACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGA 20311840 Query 26991 GGAGG 26995 || || Sbjct 20311839 GGTGG 20311835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478483458045040