Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18 127 5e-24 seq19 120 7e-22 seq26 109 1e-18 seq11 96.9 8e-15 seq3 89.7 1e-12 >seq18 Length=67275902 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 38083876 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 38083935 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 38083936 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 38083992 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | || Sbjct 38083993 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 38084052 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 38084053 ACCTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 38084102 >seq19 Length=62516450 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || | || ||||| || ||||| | || || || || ||| Sbjct 32928387 TCCTTCTGGATATTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 32928446 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 32928447 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 32928506 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||||| || || ||||| ||||| |||||||| ||||| ||| Sbjct 32928507 TCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 32928566 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 32928567 AAGATCTGCAT 32928577 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 32928159 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 32928218 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 32928219 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 32928278 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 32928279 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 32928338 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 32928339 AAGATCTGCAT 32928349 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 32928615 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 32928674 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 32928675 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 32928734 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 32928735 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 32928794 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 32928795 AAGATCTGCAT 32928805 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 32928843 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 32928902 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || ||||| || Sbjct 32928903 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 32928962 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 32928963 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 32929022 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 32929023 AAGATTTGCATTTTG 32929037 >seq26 Length=51421553 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 9312787 TCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 9312846 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362 | || | ||| ||||| | ||| || || | |||||||| | |||| | || | Sbjct 9312847 CAAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGA-- 9312904 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| ||||||||||| || || || || |||||| | | ||| | || Sbjct 9312905 -GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTC 9312963 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 || || || ||| | |||||||| ||||| ||||| | ||| ||||||| Sbjct 9312964 GACCTCAAGAGTGGTGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCA 9313013 >seq11 Length=106225002 Score = 96.9 bits (106), Expect = 8e-15 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || |||| || || ||||||| ||| || ||||| || || |||| || Sbjct 47457341 TCCACCACGACGTCTCAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTTGGT 47457400 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATC 288362 | | | ||| ||||| | |||||| || || | |||||| | |||| | || | Sbjct 47457401 CAAAGA-CATCCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGA-- 47457457 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || | ||||| ||||||||||| || || || || |||||||| | ||| | | Sbjct 47457458 -GGAACACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTT 47457516 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | ||| | ||| ||||||| |||| ||||| ||||| |||||||| ||| Sbjct 47457517 GACCTTGAGAGAGATGCTCTTCCCTGTCAAGGTCTTCACGAAAATCTGCATCATG 47457571 >seq3 Length=120038259 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/231 (69%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || | ||||| ||| || ||||| || || ||||| | Sbjct 100093956 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 100094015 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | | |||| ||||| | || || || || |||||||| | |||| | || | Sbjct 100094016 AAAGCATGTCCATCTTCCACGTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 100094072 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || | | || | |||||| | ||| | || Sbjct 100094073 GGAATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCG 100094132 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCA-GAGTCTTGACGAATATCTGCAT 288473 || | ||| ||||| |||||||| |||| ||||||| || || |||||||| Sbjct 100094133 ACCTTGAGAGTGATGGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCAT 100094183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179202375971946