Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17 84.2 2e-11 >seq17 Length=71137785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||| |||| |||| ||||| || || || || || | || ||| || Sbjct 20311847 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20311906 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||| ||||||||| |||| || || | |||||| || | ||| | ||||||||| Sbjct 20311907 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTT 20311966 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTC--TGCGCTTTCCACGTCCAAAGTAA 39682 || || || || | || | | ||||| || ||| |||| |||| ||| | Sbjct 20311967 TCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCT--CCACCTCCAGAGTGA 20312024 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || | || ||||| ||||||||||| Sbjct 20312025 TGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 20312061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347242986711731